New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3203112 =	NA (NA)	25 (0.170)	7/164	NT	NA	coding (1222/1239 nt)	cca	fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
	?	NC_000913	3203140 =	NA (NA)					intergenic (+11/+170)	cca/bacA	fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase

ACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3203217‑3203112 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggcaTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG  >  NC_000913/3203140‑3203238                                                                                                                                                                                                               ACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTT                                                                                                           <  1:3075776/100‑1  CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCCTCCGGCAAAATGCCCAATACTCATTCAGGCTTT                                                                                                          >  2:1032245/1‑100  CGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTT                                                                                                          <  2:139401/100‑1   GCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTG                                                                                                         >  1:1175282/1‑100   GCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTG                                                                                                         <  1:2957802/100‑1    CTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGG                                                                                                        <  2:1757547/100‑1    CTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATCAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGG                                                                                                        >  2:1576151/1‑100    CTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGG                                                                                                        <  2:1643924/100‑1     TTGCGCGTCTTATCAGGCCTCCAACTGTAGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCATGCTTTGGt                                                                                                       <  2:1918149/100‑2     TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG                                                                                                       <  1:2210794/100‑1     TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG                                                                                                       <  2:4053508/100‑1     TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG                                                                                                       <  2:436458/100‑1     TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG                                                                                                       <  1:3079253/100‑1     TTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG                                                                                                       >  1:1004258/1‑100      TGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGC                                                                                                      >  1:2341562/1‑100      TGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGC                                                                                                      <  2:3823758/100‑1      TGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGC                                                                                                      <  1:2793989/100‑1      TGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGC                                                                                                      >  1:95479/1‑100      TGCGCGTCGTATCCGGCCTACAACTGTCGTTGCCACGTAGCAGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGG                                                                                                       <  1:3911168/99‑1       GCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCA                                                                                                     >  2:1352349/1‑100       GCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCA                                                                                                     >  2:2794140/1‑100                                                                CCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGG                                            >  2:3696840/1‑100                                                                      CCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGAT                                      >  2:3766936/1‑100                                                                       CGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATA                                     >  2:4165316/1‑100                                                                       CGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATA                                     >  2:556992/1‑100                                                                       CGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATA                                     >  2:1622983/1‑100                                                                       CGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATA                                     >  1:4093761/1‑100                                                                        GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGTGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAA                                    >  2:1783232/1‑100                                                                        GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAA                                    >  2:4258267/1‑100                                                                        GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAA                                    >  1:667173/1‑100                                                                        GGCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAA                                    >  1:55415/1‑100                                                                         GCAACATGCCCAATACTCATTCAGGCTTTGGCCATTTTGCCGGATGCGGCGTAAACGCCTTATCAGGCTACATGTCAACGACGGTTGTAGGCCTCATA                                     >  1:252216/1‑98                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGGTAAG                                   >  2:1538788/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  2:2087501/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  1:1925941/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  2:2771273/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  2:265717/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  2:4387039/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  2:2273047/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  1:1860490/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAG                                   >  2:1121192/1‑100                                                                         GCAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACAACAGTTGTAGGCCTGATAAG                                   >  1:4287786/1‑100                                                                          CAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGA                                  >  2:3644050/1‑100                                                                          CAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGA                                  >  2:4180943/1‑100                                                                          CAAAATGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATAAGA                                  >  1:395032/1‑100                                                                               TGCCCAATACTCATTCAGGCTTTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGC                             >  2:1290028/1‑100                                                                                                    TTGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGA        >  1:3573093/1‑100                                                                                                     TGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGATGAT       >  1:782627/1‑100                                                                                                     TGGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTACGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGAT       >  1:1938527/1‑100                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      >  2:3331644/1‑100                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      <  2:483412/100‑1                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      >  2:787897/1‑100                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      >  1:2548603/1‑100                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      >  1:3382064/1‑100                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      <  2:3665236/100‑1                                                                                                      GGGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATT      >  2:1070879/1‑100                                                                                                       GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG     >  2:3739100/1‑100                                                                                                       GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG     >  2:4196015/1‑100                                                                                                       GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG     >  2:3521789/1‑100                                                                                                       GGCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTG     >  2:1689755/1‑100                                                                                                        GCATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGC    >  2:909340/1‑100                                                                                                         CATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCC   >  2:1786610/1‑100                                                                                                          ATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG  >  2:1200733/1‑100                                                                                                          ATTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG  <  2:2564734/100‑1                                                                                                                                                                                                               ACGCTTGCGCGTCTTATCAGGCCTACAACTGTCGTTGACATGTAGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAATGCCCAATACTCATTCAGGCTTTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3203217‑3203112 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggcaTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCTACATGTCAACGACAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCGTTGATTGCCG  >  NC_000913/3203140‑3203238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.