| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3296999 = | NA (NA) | 21 (0.150) | 12/164 | NT | NA | noncoding (1/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3297032 = | NA (NA) | noncoding (34/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3297104‑3296999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggc‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCAC > NC_000913/3297032‑3297130 GTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA > 2:1479466/1‑100GTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA > 1:57367/1‑100 CTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA > 2:4243321/1‑100 CTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA > 2:1829874/1‑100 CTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA > 1:523071/1‑100 CTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA > 1:2818320/1‑100 CTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCA < 1:2611209/100‑1 TGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAG > 1:1268866/1‑100 GATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG < 1:1833701/100‑1 GATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG > 1:3892249/1‑100 ATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC > 1:2617682/1‑100 ATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC > 2:3813363/1‑100 TGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAT > 1:2371284/1‑100 TGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACAT > 1:2329627/1‑100 GTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATG > 2:2339446/1‑100 GTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGGAGGTCAGATAAGGCGTTTACGCCGCATCCGACATG > 2:2320166/1‑100 ATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTT > 2:3957837/1‑100 GTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCC > 1:1835953/1‑100 GTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTC > 1:3930038/1‑100 TAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCA > 2:4009704/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAA > 1:763554/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTCTCCCTCAAA > 1:4240222/1‑100 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTGTTCCCTCAA > 1:1869535/1‑99 GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACACGTTTTCCCTCAAA > 1:2382776/1‑100 GCCTGATAAGACGCGGCAAGCGTCTTATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT > 1:4297948/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT > 1:2496737/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT > 1:1696034/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAAT > 1:1813991/1‑100 GCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGGCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAA > 2:1702839/1‑98 CCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATC > 2:2098818/1‑100 TGATAAGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCA > 2:2390634/1‑100 GATAAGACGCGGCAAGCGTCGCATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGA > 2:29410/1‑100 AGACGCGGCAAGCGTCGCATCAGGCATTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACA < 1:2390624/100‑1 ATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAC > 1:3183639/1‑100 ATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAC < 1:1697562/100‑1 ATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAC < 1:2424887/100‑1 ATCAGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGAC > 1:988168/1‑100 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT < 2:92602/100‑1 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT < 2:688651/100‑1 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT > 1:578199/1‑100 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT > 1:577777/1‑100 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT > 1:4212089/1‑100 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT < 1:3566080/100‑1 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT < 1:3152726/100‑1 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT < 1:1984086/100‑1 AGGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAAT < 1:1508294/100‑1 GGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATC < 1:3154755/100‑1 GGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATC < 2:3969562/100‑1 GGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATC > 1:1616608/1‑100 GGC‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGA < 1:2092821/95‑1 C‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATC > 1:1457168/1‑98 C‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCACATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCAC < 1:3838299/100‑1 GTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3297104‑3296999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggc‑CTACAACGATACAAACCGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATGTTTTCCCTCAAATCAGAACAACAGCGCCAGCCCGCCGACAATCAC > NC_000913/3297032‑3297130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |