| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3344335 = | 114 (0.730) | 20 (0.130) | 11/168 | NT | 15.1% | coding (392/726 nt) | lptB | lipopolysaccharide export ABC transporter ATPase |
| ? | NC_000913 | 3344356 = | 117 (0.790) | coding (413/726 nt) | lptB | lipopolysaccharide export ABC transporter ATPase | |||||
AAACGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3344438‑3344335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcacTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGACCCG > NC_000913/3344356‑3344453 AAACGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTG < 2:3334935/100‑1 AACGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGT > 2:3786517/1‑100 ACGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTC > 2:2031016/1‑100 ACGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTC < 1:4408824/100‑1 CGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTCA > 2:418149/1‑100 CGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTCCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTCA < 1:1725103/100‑1 GGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTCA > 1:1258078/1‑99 TCACCCCCGGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTC > 1:286583/1‑100 CCCGGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTCGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTC > 1:2439929/1‑100 CCCGGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTC > 1:975020/1‑100 CCCGGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTC > 1:2229054/1‑100 CCGGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCT > 1:4308886/1‑98 GGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGAC < 2:975022/100‑1 GGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGAC > 1:1308772/1‑100 GGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGAC > 2:3356636/1‑100 GGAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGAC > 1:1707424/1‑100 ggGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCTGAAATTTATTCTGCTCGACG > 1:3535519/3‑100 GAGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACG > 1:2447249/1‑100 AGAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGACATTTATTCTGCTCGACG > 1:4123061/1‑99 GAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAA > 1:431374/1‑100 GAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAA > 2:1551795/1‑100 GAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAA > 2:1617999/1‑100 GAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAA > 1:1680308/1‑100 GAGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGAC > 1:1924402/1‑97 AGTGACTGCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAAC > 1:1471593/1‑100 GACTGCCCCATGCTGTCACTGTCCGGGGGTGAACGTCGCCGTGTAGACATTGTCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCCACGACCC > 1:2695370/1‑98 GCCCCATGCTGTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGC > 2:2894058/1‑100 GTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGAC > 1:1207448/1‑100 GTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGAC > 2:3038379/1‑100 GTCACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGAC > 2:418513/1‑100 ctACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGACC < 2:1413421/98‑1 TCACTCTCCGTGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTGTTTTGCTCGACGAACCGTTTGCCGGGGTTGACC < 1:2907039/100‑1 CACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGACCC < 2:3554850/100‑1 ACTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGACCag > 1:1413415/1‑98 AAACGGTTCGTCGAGCAGAATAAATTTCGGATTCGCAGCCAGTGCGCGGGCAATTTCTACACGGCGACGTTCACCCCCGGAGAGTGACTGCCCCATGCTGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3344438‑3344335‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcacTCTCCGGGGGTGAACGTCGCCGTGTAGAAATTGCCCGCGCACTGGCTGCGAATCCGAAATTTATTCTGCTCGACGAACCGTTTGCCGGGGTTGACCCG > NC_000913/3344356‑3344453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |