New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3546222 =	NA (NA)	20 (0.140)	8/166	NT	NA	noncoding (1/36 nt)	REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	3546254 =	NA (NA)					noncoding (33/36 nt)	REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATTATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3546326‑3546222 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT  >  NC_000913/3546254‑3546352                                                                                                                                                                                                              ATTATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGAGGCTTTAGCGTCGCAT                                                                                                          >  2:4348543/1‑100    ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGG                                                                                                       >  2:220617/1‑100    ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCG                                                                                                        <  2:4397416/99‑1     TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG                                                                                                      <  2:3060065/100‑1     TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG                                                                                                      <  1:3688715/100‑1      CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC                                                                                                     >  1:773638/1‑100      CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC                                                                                                     <  1:4340741/100‑1           GGAAACGAACCGAGGATTTGACAATGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG                                                                                                      <  1:3863521/94‑1                                                               GTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTC                                            >  1:2538873/1‑100                                                               GTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTC                                            >  1:1599028/1‑100                                                                      GTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGATGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCC                                     >  1:899063/1‑100                                                                       TAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCC                                    >  1:3929072/1‑100                                                                       TAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCC                                    >  2:2899635/1‑100                                                                         GGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC                                  >  2:2888731/1‑100                                                                          aCCCGAAATGACGCTTTAGCGTCGCATCGGGCATACGTTGCACATGTGCCAGAAGTTGGCGCAGCATTGCTTTATAAAAGCCTCGGTTCGTTTCC                                      >  1:1955540/2‑95                                                                          GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG                                 >  2:3095532/1‑100                                                                          GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG                                 >  1:3788476/1‑100                                                                          GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG                                 >  2:3865021/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  1:1258772/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  2:2770097/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  2:2582719/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  2:3603425/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  2:4062068/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  2:4164583/1‑100                                                                           CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA                                >  1:3719576/1‑100                                                                             CGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATA                              >  1:4268785/1‑100                                                                              GAAATGACGCTTTAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAA                             >  2:2998655/1‑100                                                                              GAAATGACGCTTTAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAA                             >  1:2022116/1‑100                                                                                                     CGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTA      >  2:3757608/1‑100                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCTTAATTTAAA    >  2:1509668/1‑100                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA    <  2:1934290/100‑1                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA    <  2:3473552/100‑1                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA    >  2:2066763/1‑100                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA    <  1:1243468/100‑1                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA    <  1:1567467/100‑1                                                                                                       GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAA     <  1:4081464/99‑1                                                                                                        GCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAAT   <  2:3466715/100‑1                                                                                                        GCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAAT   <  1:2219877/100‑1                                                                                                        GCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAAT   <  2:846536/100‑1                                                                                                         CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT  >  1:396897/1‑100                                                                                                                                                                                                              ATTATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3546326‑3546222 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT  >  NC_000913/3546254‑3546352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.