New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3547887 =	NA (NA)	16 (0.110)	10/164	NT	NA	noncoding (1/87 nt)	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	3547917 =	NA (NA)					noncoding (31/87 nt)	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP254 (repetitive extragenic palindromic) element; contains 2 REP sequences

GAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3547992‑3547887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCG  >  NC_000913/3547917‑3548015                                                                                                                                                                                                               GAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCA                                                                                                           >  2:484276/1‑100    GTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCC                                                                                                        <  2:192119/100‑1    GTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCC                                                                                                        <  2:2683115/100‑1     TAGGGTGCGGTTGTTGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTACTTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCG                                                                                                       <  1:1646816/100‑1      AGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGCCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGG                                                                                                      <  1:4153827/100‑1       GAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC                                                                                                     <  2:131173/100‑1       GAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC                                                                                                     <  1:3173375/100‑1       GAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC                                                                                                     <  2:2174806/100‑1       GAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC                                                                                                     <  2:3119505/100‑1       GAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC                                                                                                     <  2:3362793/100‑1            CGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCA                                                                                                           >  1:2491893/1‑89                                                                  CCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCAT                                          >  1:1076341/1‑100                                                                         GTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGC                                   >  1:1430611/1‑100                                                                           AGGCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCCACCGCAC                                 >  1:3044744/1‑100                                                                            GGCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATGAGTAGGCCGGCTAAGACGCGTCAAGCATCGCATCCGGCATCAA                                       >  1:2715520/1‑93                                                                             GCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTC                               >  1:3259551/1‑100                                                                             GCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTC                               >  2:1998249/1‑100                                                                             GCCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTC                               >  2:1337090/1‑100                                                                              CCGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCT                              >  2:490808/1‑100                                                                               CGGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTA                             >  2:2012668/1‑100                                                                                GGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAC                            >  2:853150/1‑100                                                                                GGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAC                            >  2:945745/1‑100                                                                                GGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAC                            >  1:744562/1‑100                                                                                GGATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAC                            >  1:4406282/1‑100                                                                                 GATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACT                           >  2:1540257/1‑100                                                                                 GATAAGGCGGTCACGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTAC                            >  1:2304415/1‑99                                                                                              CGCCGCATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGC              <  2:1076343/100‑1                                                                                                    ATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCT        >  2:1132168/1‑100                                                                                                    ATCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTC         >  1:1500766/1‑99                                                                                                     TCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTG       >  2:3699067/1‑100                                                                                                     TCCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAAACGCACTCTACTTCTTCTTCGCTGCAGCTCTG       >  1:2866110/1‑100                                                                                                      CCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGC      >  2:2860698/1‑100                                                                                                      CCGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGC      <  1:2547573/100‑1                                                                                                      CCGGCCTACGATGCGGGATGAGTTGGTAGGTCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAGCCGCCCTCTACTTCTTCTTCGCGGCAGC           <  1:2805221/95‑1                                                                                                       CGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCG     <  2:3541873/100‑1                                                                                                       CGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCG     <  2:1251999/100‑1                                                                                                       CGGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGC      <  2:798903/99‑1                                                                                                        GGCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGAGGCGTCAAGCATCGCATCCGGCATCAAACGCACTCTACTTCTTCTTCGCTGCAGCTCTGCG     >  1:2730757/1‑99                                                                                                        GGCCTACGATTCGCGATGAATTAGTAGGCCGGATAAGAAGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGC    >  1:2730672/1‑100                                                                                                         GCCTACGATTCGGGATTACTTAGTCGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGC    <  2:3827561/99‑1                                                                                                         GCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCC   >  2:3828595/1‑100                                                                                                         GCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCC   >  1:2372461/1‑100                                                                                                         GCCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTCCGCTGCAGCTCTGCGCC   >  1:2101163/1‑100                                                                                                          CCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCG  <  2:2904562/100‑1                                                                                                          CCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCG  >  2:1875097/1‑100                                                                                                          CCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCG  <  2:3676458/100‑1                                                                                                          CCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCACTGCAGCTCTGCGCC   >  1:612321/1‑99                                                                                                          CCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACCCTACTTCTTCTTCGCTGCAGCTCTGCGCCG  >  1:4128260/1‑100                                                                                                                                                                                                               GAAGTAGAGTGCGGTTGATGCCGGATGCGATGCTTGACGCGTCTTATCCGGCCTACTAATTCATCCCGAATCGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3547992‑3547887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGATTCGGGATGAATTAGTAGGCCGGATAAGACGCGTCAAGCATCGCATCCGGCATCAACCGCACTCTACTTCTTCTTCGCTGCAGCTCTGCGCCG  >  NC_000913/3547917‑3548015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.