| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3650792 | NA (NA) | 11 (0.080) | 6/166 | NT | NA | noncoding (81/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3650805 | NA (NA) | noncoding (94/100 nt) | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3650688‑3650792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgaTGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAA < NC_000913/3650805‑3650708 GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG < 2:435398/100‑1GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG < 2:12103/100‑1GTTAGAAAAGGGCGCTTTATTTATGTGGGATGCGACGCTGGCGCGTCTTATGCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGG < 1:420885/100‑1 TTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGC > 2:1297969/1‑100 TTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGC > 1:4138745/1‑100 TTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTAAAAAGTTATGAAAATTCGCTGAATAGTATGTTATTTGTAGGC > 2:1221397/1‑100 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC < 1:2124420/100‑1 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 2:3206913/1‑100 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 2:2146032/1‑100 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 1:3554884/1‑100 TAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCC > 1:504109/1‑100 AGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCT > 2:753951/1‑100 AGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCT > 2:1446022/1‑100 AGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCT < 2:1335743/100‑1 AGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCT > 1:4222182/1‑100 GAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACGAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGGCTG > 1:421132/1‑100 GAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTG > 1:1064974/1‑100 GAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTG > 2:1106717/1‑100 GAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTG > 2:1440915/1‑100 TCGGATGCGACGCTGGCGCGTCTTATCTGATCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCC < 1:3595864/100‑1 TCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCC < 2:3108142/100‑1 TCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCC < 2:2192158/100‑1 caGATGCGACGCTGGAGCGTCTTATCCGACCTACAAAGTTATGAAAAGTCGGTGAATAGTATGTGATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCT < 2:648240/98‑1 CGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCT < 1:1808928/100‑1 GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGGAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTA < 1:3101542/100‑1 GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTA < 1:969984/100‑1 GATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTAC < 2:431243/100‑1 ATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTACA < 1:4269357/100‑1 ATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTACA < 2:705655/100‑1 ACGCTGGCGCGTCTTATCCGACCTAATAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGATGCGCTACGCCTGTCAGGCCTACAAATAA < 1:514604/100‑1 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATTCTATTCATCGAATTTTCATCACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC < 1:2408556/100‑1 GCCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC > 1:3588824/1‑100 GCCTGATGCGCTACGACTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGAC < 2:3512860/100‑1 CCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACA < 1:3467423/100‑1 CCTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACA < 1:3919207/100‑1 CTGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTAATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACAT > 1:3644092/1‑100 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA < 2:2175254/100‑1 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA < 2:1711469/100‑1 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 2:3728244/1‑100 TGATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 2:733173/1‑100 TGATGCGATACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGCTCGGATAAGACGCGCCAGCGTCGCATCCGACATA > 1:2316429/1‑100 GATGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAA > 2:3940308/1‑100 GTTAGAAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3650688‑3650792‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgaTGCGCTACGCCTGTCAGGCCTACAAATAACATACTATTCATCGAATTTTCATAACTTTGTAGGTCGGATAAGACGCGCCAGCGTCGCATCCGACATAA < NC_000913/3650805‑3650708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |