New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4035360NA (NA)33 (0.230) 8/166 NT 100% intergenic (+207/‑171) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon
?NC_000913 = 4035384 0 (0.000)intergenic (+231/‑147) hemG/rrsA protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon

ACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCgccgct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4035262‑4035360
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACC  <  NC_000913/4035384‑4035280
                                                                                                                                                                                                            
ACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCG                                                                                                          <  2:4375080/100‑1
 CGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGCCTCTGTAGCGGGAAGGCGTATTATGCTCACCCCGAGC                                                                                                         >  1:1062165/1‑100
 CGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGC                                                                                                         <  2:2470861/100‑1
  GCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCC                                                                                                        <  1:1830730/100‑1
  GCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCC                                                                                                        <  2:3441875/100‑1
  GCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCC                                                                                                        <  2:3260542/100‑1
   CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCG                                                                                                       >  2:416887/1‑100
   CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCG                                                                                                       >  1:656550/1‑100
    CGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGC                                                                                                      >  2:1269046/1‑100
    CGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGC                                                                                                      <  2:1116065/100‑1
     GCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCT                                                                                                     <  2:644249/100‑1
     GCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCT                                                                                                     >  2:2223226/1‑100
     GCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCT                                                                                                     >  1:486419/1‑100
     GCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGC                                                                                                      >  1:125802/1‑99
     GCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACGCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCT                                                                                                     >  2:4196809/1‑100
                      CTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGG                                                                                    <  1:1258884/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGTCTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  2:3206580/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  2:751324/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  2:2289331/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  1:2188541/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  2:1094713/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  2:1023721/100‑1
                        CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCG                                                                                  <  2:659111/100‑1
                         CTGAGAGCTCCGGCAAAGAAAGCAAAAATAAATGCTTGCCTCTGTAGCGGGAAGGCGTATTATGCACACCCCCCGCCGCTTCGCTTTTTCTCAGCGGCGC                                                                                 <  1:2027660/100‑1
                          TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCG                                                                                <  1:2010607/100‑1
                          TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCG                                                                                <  2:3423374/100‑1
                          TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCG                                                                                <  1:465342/100‑1
                          TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCG                                                                                <  2:3145642/100‑1
                          TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCG                                                                                <  2:130940/100‑1
                          TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCG                                                                                <  1:4140446/100‑1
                           gaggtCTCCGGCAGAGAAAACAAAAATAAATGCTTGACTCTGTAGCGGGAAGTCGTAGTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGG                                                                               <  1:1936108/95‑1
                           GAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGG                                                                               <  2:1198548/100‑1
                           GAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGG                                                                               <  1:3273829/100‑1
                           GAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGG                                                                               <  2:1494642/100‑1
                           GAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGG                                                                               <  2:2366284/100‑1
                            agcACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGG                                                                               <  2:1322532/96‑1
                            AGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGTACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGGG                                                                              <  1:2713564/100‑1
                            AGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGGG                                                                              <  1:3684675/100‑1
                            AGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGC                                                                                 <  1:78968/97‑1
                            AGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGGG                                                                              <  2:4378976/100‑1
                             gacctaCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGGGG                                                                             <  2:1079788/94‑1
                             GAACTCCTGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGTCGTATGATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGGGG                                                                             <  1:550899/100‑1
                             GAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGGGG                                                                             <  2:3722491/100‑1
                              AACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGGGGT                                                                            <  2:1870913/100‑1
                                   CGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGGGGTGTGCA                                                                       <  2:1606198/100‑1
                                   CGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGGGGTGTGCA                                                                       <  2:1605857/100‑1
                                         AGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATAC                                                                 <  2:105382/100‑1
                                                                           gaaaGCGTATTATGCACACCCCGCGCCGCTTTGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCTTTCCCGCTACAGAGTCAAGCATTTATTTTTG                               <  2:3544619/96‑1
                                                                                                   GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGA       >  1:2750824/1‑100
                                                                                                   GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGA       <  2:1870257/100‑1
                                                                                                   GCCGCTTCGCTTGTTCTCAGCGGCGCGGTGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTAGTTTTGCTTTCTCTGCCGGAGTTCTCAGGA       <  1:1448694/100‑1
                                                                                                    CCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG      <  2:31097/100‑1
                                                                                                    CCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG      <  2:3581938/100‑1
                                                                                                     CGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGCGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGCTCTCAGGAGA     >  1:3500433/1‑100
                                                                                                     CGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGA     <  2:1502948/100‑1
                                                                                                      GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCCGGAGAA    >  1:524129/1‑100
                                                                                                      GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAA    >  2:1087799/1‑100
                                                                                                      GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAA    >  2:2496215/1‑100
                                                                                                      GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAG      <  1:4202980/98‑1
                                                                                                       CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAAC   >  2:236657/1‑100
                                                                                                       CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAAC   <  1:2200259/100‑1
                                                                                                       CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAAC   <  2:513974/100‑1
                                                                                                        TTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACC  <  1:3049512/100‑1
                                                                                                                                                                                                            
ACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCgccgct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4035262‑4035360
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTATTTTTGCTTTCTCTGCCGGAGTTCTCAGGAGAACC  <  NC_000913/4035384‑4035280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.