New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4058302	126 (0.800)	22 (0.160)	13/160	NT	15.2%	intergenic (‑268/‑105)	glnA/typA	glutamine synthetase/GTP‑binding protein
	?	NC_000913	= 4058333	132 (0.940)					intergenic (‑299/‑74)	glnA/typA	glutamine synthetase/GTP‑binding protein

CGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4058195‑4058302 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcacaaaCATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAAT  <  NC_000913/4058333‑4058235                                                                                                                                                                                                                 CGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCG                                                                                                             >  2:2365769/1‑100   ATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGAT                                                                                                           <  1:1280327/100‑1   ATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGAT                                                                                                           <  1:768404/100‑1   ATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGAT                                                                                                           <  1:3339472/100‑1    TGTGAATGTTGCTCCAATATAGTGCTTCAATGGAAACATTAAGTACCATGTTGGTGCAATGACCTTTTGGTAACCCTTTTTATGCTCCGTGAAAGCGAT                                                                                                           <  1:3906340/99‑1     GTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCA                                                                                                         <  2:150576/100‑1     GTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCA                                                                                                         <  1:4313997/100‑1     GTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCA                                                                                                         >  1:2935769/1‑100      TGAATGTTGCACCAATATAGTGCTTCAATGGCAACATTAAGCACCATGTTGATGCAATGACCTTTGGATAACCCTTATTATGCTCCGTGAAAGCGATCAC                                                                                                        >  2:879117/1‑100      TGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCAC                                                                                                        <  2:4324355/100‑1      TGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCAC                                                                                                        >  2:3904612/1‑100       GAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACA                                                                                                       >  1:3771212/1‑100                              TCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATT                                                                                >  1:1565495/1‑100                                       ACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCCGCAAACAAGTATTGCAGAGTCC                                                                       <  1:3129341/100‑1                                          TTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCCGCAAACAAGTATTGCAGAGTCCCTT                                                                    <  2:2795255/100‑1                                             AGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCCGCAAACAAGTATTGCAGAGTCCCTTTG                                                                  <  2:3262657/99‑1                                              gaACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTG                                                                <  1:1714286/98‑1                                              GCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTG                                                                >  2:2420855/1‑100                                                 CCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATC                                                             <  1:267766/100‑1                                                  CATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  2:1577650/100‑1                                                  CATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:417362/100‑1                                                  CATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:3643989/100‑1                                                  CATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:334331/100‑1                                                  CATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  2:1616225/100‑1                                                  CATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:2420844/100‑1                                                   ATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:908638/99‑1                                                   ATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCCCAAACAAGTATTGCAGAGTCCCTTTGTGATCGC                                                           <  1:761942/100‑1                                                   ATGTTGGTGCAATGACCTTTGAATAACCCTCTTTATGCTCCGTAAAAGCGAGTACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:3775581/99‑1                                                    TGTTGGTGCAATGACCTTTGGATAACCTTTTTTATTCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCG                                                            <  1:1629024/98‑1                                                      TTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTT                                                        <  2:1095548/100‑1                                                       TGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTC                                                       <  1:1540016/100‑1                                                         GTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCAC                                                     <  2:3049696/100‑1                                                         GTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCAC                                                     <  2:3532974/100‑1                                                                         ATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGT                                     <  2:1565501/100‑1                                                                                                    GATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGG          <  1:1992542/100‑1                                                                                                    GATCACAAACATCCGCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGG          <  1:1336187/100‑1                                                                                                     ATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCGCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGT         >  1:2361103/1‑100                                                                                                     ATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGT         <  2:1488288/100‑1                                                                                                     ATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGT         >  2:528977/1‑100                                                                                                     ATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGT         <  1:4005873/100‑1                                                                                                     ATCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGG          <  2:2817271/99‑1                                                                                                      TCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTG        >  2:3148255/1‑100                                                                                                      TCACAAACATCCTCCGCAAACAAGTATTGCAGAGTCACTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACTAACATGGTG        >  1:2933589/1‑100                                                                                                       CACAAATATCATCCGCAAACAAGTATTGTAGAGTCCTTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTG        <  1:1994401/99‑1                                                                                                       CACAAACATCCTCCGCAAACAAGTATTGCAGCGTCCCTTTGTGATCGCTTTCACGAAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTG        >  1:4107508/1‑99                                                                                                       CACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGC       <  2:3959129/100‑1                                                                                                        ACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAGAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCT      >  1:2965156/1‑100                                                                                                        ACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCT      <  2:1443901/100‑1                                                                                                        ACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCT      >  2:1156128/1‑100                                                                                                        ACAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCT      <  2:1443730/100‑1                                                                                                         CAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTT     >  2:2851169/1‑100                                                                                                         CAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTT     <  2:3409143/100‑1                                                                                                         CAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTT     >  2:1263352/1‑100                                                                                                         CAAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTT     >  2:702693/1‑100                                                                                                          AAACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTA    >  1:1355980/1‑100                                                                                                           AACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAA   <  1:2211017/100‑1                                                                                                            ACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAAT  <  2:2947776/100‑1                                                                                                            ACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAAT  <  1:2505664/100‑1                                                                                                            ACATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAAT  <  2:817864/100‑1                                                                                                                                                                                                                 CGATGTGAATGTTGCACCAATATAGTGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4058195‑4058302 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcacaaaCATCCTCCGCAAACAAGTATTGCAGAGTCCCTTTGTGATCGCTTTCACGGAGCATAAAAAGGGTTATCCAAAGGTCATTGCACCAACATGGTGCTTAAT  <  NC_000913/4058333‑4058235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.