| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4148370 = | 198 (1.260) | 33 (0.230) | 10/164 | NT | 15.3% | intergenic (‑53/+162) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| ? | NC_000913 | 4148393 = | NA (NA) | intergenic (‑76/+139) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase | |||||
CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4148475‑4148370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAC > NC_000913/4148393‑4148490 CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACGTCCGGCAATACAACTGCCGCAATGTTTACATCGACCTCCCCTCAGGCCACACTTTTCAGG < 2:711170/100‑1CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGG > 2:1073011/1‑100CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGG < 1:2350669/100‑1CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGG > 2:1561867/1‑100CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGG > 2:174431/1‑100 AGATCGCGTCGTTATGCTGGCTAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGT < 1:3615032/100‑1 GATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTG < 2:1455037/100‑1 GATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTG < 1:1708667/100‑1 ATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGG < 2:2785275/100‑1 ATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGG > 1:4331143/1‑100 ATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGG < 1:3354934/100‑1 ATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGG < 1:3816722/100‑1 TCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGC < 1:3197651/100‑1 TCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGG < 2:1072916/99‑1 CGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCC > 2:659959/1‑100 CGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCC > 1:1588882/1‑100 CGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACAGCCGCAATGTTTACATCGAACTCCCCCCAGGCCACACTTTTCAGGTGGCC < 1:839197/100‑1 GCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCT < 1:388529/100‑1 GCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCT < 1:3453764/100‑1 CATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTAT > 2:2840907/1‑100 CATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTAT > 1:15260/1‑100 ttccgatCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGC < 2:2803637/93‑1 TCCCCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTA > 1:493795/1‑100 CCCTCAGGCCACACTTTTCAGGTGGCCTGAGGTGAGTTCGATGTAAACATTGCGGCCGTTGTATTGCCGGTTGTGGCGTAAACGCCTTAGCCAGCCT > 1:507290/1‑97 CCCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACC > 2:316688/1‑100 CCCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACC > 1:2510977/1‑100 CCCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTAGCGTAAACGCCTTATCCAGCCTACC > 2:805391/1‑100 CCTCAGGCCACACTTTTCCGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTCATCCAGCCTACC > 1:531004/1‑99 CCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATTTGGCGTAAACGCCTTATCAAGCCTACC > 1:1170184/1‑99 CCTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGCTCGATGTAAACATTGCGGCAGTTGTATTGCCGGCTGTGGCGTAAACGCCTTATCCAGCCTCCCG > 1:16484/1‑100 CTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGC > 2:3246501/1‑100 CTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGC > 2:1114427/1‑100 CTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGC > 2:291399/1‑100 CTCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGC > 2:2456308/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCGGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 1:4039807/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 2:2100108/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 1:3272382/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 2:3468509/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 2:3465661/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 2:3239971/1‑100 TCAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCC > 1:1764525/1‑100 CAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCagatcggaa > 1:2803620/1‑91 CAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCG > 2:3587010/1‑100 CAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCG > 2:3936179/1‑100 CAGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCG > 2:2327820/1‑100 AGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGC > 1:3129444/1‑100 AGGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGC > 2:782561/1‑100 GGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCG > 2:2844825/1‑100 GGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCG > 1:1859508/1‑100 GGCCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCG > 2:2757882/1‑100 GGCCACACTTTTCAGGTGGCCTGAGGGGAGATCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTAGCGTAAACGCCTTAGCCAGCCTACCGCCGCG > 1:2123777/1‑100 CCACACTTTTCAGGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGAT > 2:1240207/1‑100 TGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATA < 1:3185706/100‑1 GGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAA > 2:1327299/1‑100 GGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAA > 1:1826947/1‑100 CCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGA > 2:3155016/1‑100 CCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGA > 2:3524449/1‑100 CTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAC > 1:3351527/1‑100 CAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACATCGAACTCCCCTCAGGCCACACTTTTCAGGTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4148475‑4148370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcctGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATAAGAC > NC_000913/4148393‑4148490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |