| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4332016 | NA (NA) | 10 (0.070) | 7/160 | NT | NA | noncoding (3/32 nt) | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4332045 | NA (NA) | noncoding (32/32 nt) | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP326 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4331917‑4332016‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAATC < NC_000913/4332045‑4331941 GAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGAT > 2:912989/1‑100GAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGAT > 2:612150/1‑100GAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGAT > 2:2273658/1‑100 AAAATCGATGATATTGACCACGAGATTGCCGGTTTGCAGGCGAAACGTACCCGCCTGGTGGAGCAACCTCCGCGAATTGATGAATAAGCTGAAACGGATG > 1:3092979/1‑100 AAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGG < 2:3858252/100‑1 AATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCATGGTGCAGCAACATCAGCGAATTGATGAATAAGCTGAAACGGATGGC > 1:2448269/1‑100 ATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCC < 1:235105/100‑1 ATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCC < 1:2554374/100‑1 ATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGC < 2:1109392/99‑1 TCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCT > 2:1528527/1‑100 CGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGACTCGATGAATAAGCTGAAACGGATGGCCTG > 2:4395717/1‑100 CGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTG > 2:2015680/1‑100 CGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTG > 2:4319083/1‑100 GATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGA > 2:2604403/1‑100 GATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGA > 2:1875093/1‑100 GATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGA > 2:625114/1‑100 GATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGA > 1:1391731/1‑100 ATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAT > 1:2688524/1‑100 ATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAT > 1:3158001/1‑100 ATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAT > 2:1740092/1‑100 GCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGC < 2:1583468/100‑1 GCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGC < 1:177408/100‑1 GATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGCCAT < 1:1007362/100‑1 GATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGCCAT < 2:640913/100‑1 ATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACTGATGGCCTGATAAGACAGCGTCACATCAGGCCATC < 2:3259709/100‑1 ATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGCCATn < 2:1949511/100‑2 TTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGCCATCC < 1:502633/100‑1 TTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGCCATCCG < 1:3247558/100‑1 GTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCG > 2:3011793/1‑100 CAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGCTAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTT < 1:3105342/100‑1 TGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCG < 1:365202/100‑1 TGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCG > 2:3518408/1‑100 TGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCG < 2:2893110/100‑1 TGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCG < 2:3502203/100‑1 GGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGG < 1:3466780/100‑1 GGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGG < 1:3203581/100‑1 GGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGG < 2:3990712/100‑1 GCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGC < 1:1353143/100‑1 GCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGC > 2:1666692/1‑100 GCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGC < 1:475801/100‑1 CTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAA > 2:2148582/1‑100 CTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGC < 1:1411815/98‑1 CTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCAACAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAA > 2:2789043/1‑100 CTGATAAGACAGCGTCACATCAGGCCATCCGTTCCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAAGCGGGTACGTTTCGCCTGCAAATCGGCAA > 1:2642053/1‑100 TGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAAT > 1:2517452/1‑100 TGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAAT > 1:3129590/1‑100 GATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAATC > 1:4041493/1‑100 GAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATggcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4331917‑4332016‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGGCCTGATAAGACAGCGTCACATCAGGCCATCCGTTTCAGCTTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAATC < NC_000913/4332045‑4331941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |