New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4344821120 (0.760)24 (0.170) 10/160 NT 18.3% noncoding (7/95 nt) RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 4344832 107 (0.760)noncoding (18/95 nt) RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

ATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4344714‑4344821
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctgatAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCGGG  <  NC_000913/4344832‑4344734
                                                                                                                                                                                                               
ATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAAT                                                                                                             <  1:1682658/100‑1
 TAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATG                                                                                                            <  1:2014413/100‑1
  AAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTAGCTGCAGCGAGTGATCTGAAAGCCTGACGTGGATAATCGCTAACGAACATGG                                                                                                           >  1:4376909/1‑100
    ATATCGCAAAGTACCGCCCGAGCCTGTTTATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCC                                                                                                         >  2:982786/1‑100
    ATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCC                                                                                                         <  2:2118864/100‑1
    ATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCC                                                                                                         <  2:1488415/100‑1
    ATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCC                                                                                                         <  1:2012536/100‑1
      ATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTG                                                                                                       <  2:2147223/100‑1
      ATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTG                                                                                                       >  2:4271280/1‑100
      ATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCT                                                                                                        <  1:2120597/99‑1
      ATCGCAAAGTACCGCCCGAGCATGTTCATGCTGATATTCCGGTCGGTGAAGGGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCT                                                                                                        >  2:776616/1‑99
        CGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGAT                                                                                                     >  2:2567383/1‑100
              GTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACAT                                                                                               >  2:2565134/1‑100
                           CTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCC                                                                                  <  2:973325/100‑1
                           CTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCC                                                                                  <  2:654950/100‑1
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAGTGGCCTGATAAACATATCGCATCAGGCCn                                                                                 <  1:481908/100‑2
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAACCATATCGCATCAGGCCA                                                                                 <  1:3196462/100‑1
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCA                                                                                 <  1:2276429/100‑1
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCA                                                                                 <  2:340457/100‑1
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCA                                                                                 <  1:495258/100‑1
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCA                                                                                 <  1:4339636/100‑1
                            TGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCA                                                                                 <  1:2565121/100‑1
                             GTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCAT                                                                                <  1:2636815/100‑1
                             GTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCAT                                                                                <  1:2635728/100‑1
                              TTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACCTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCAT                                                                                <  1:4098728/99‑1
                               TCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTT                                                                              <  1:4224506/100‑1
                               TCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTT                                                                              <  2:3669465/100‑1
                                CATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTT                                                                             <  1:3189977/100‑1
                                CATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTT                                                                             <  2:4095260/100‑1
                                CATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTT                                                                             <  2:693623/100‑1
                                 ATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAGGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTTC                                                                            <  1:1347926/100‑1
                                 ATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTTC                                                                            <  2:1524614/100‑1
                                  TGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTTCG                                                                           <  1:3148475/100‑1
                                  TGCTAATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTTCG                                                                           <  1:2504700/100‑1
                                   GCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATAAACATATCGCATCAGGCCATTTTCGT                                                                          <  1:283076/100‑1
                                    CTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTAATAAACATATCGCATCAGGCCATTTTCGTT                                                                         <  1:87074/100‑1
                                                                                                   TGGCCTGATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGTAATATCAGCATGAACA          <  2:2134023/100‑1
                                                                                                   TGGCCTGATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACn          <  2:2240531/100‑2
                                                                                                    GGCGTGATAAACATATCGCATCTGGCCATTTTCGGTAGCAATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACA          <  1:3358600/99‑1
                                                                                                    GGCCTGATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAG         >  2:3736530/1‑100
                                                                                                    GGCCTGATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAG         >  2:1833681/1‑100
                                                                                                      CCTGATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGC       >  1:228663/1‑100
                                                                                                       CTGATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCT      >  2:2661014/1‑100
                                                                                                         GATAAACATATCGCATCAGGTCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCG    <  2:4034656/100‑1
                                                                                                         GATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCG    <  2:1719853/100‑1
                                                                                                         GATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCG    >  2:1739122/1‑100
                                                                                                         GATAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCG    >  2:547730/1‑100
                                                                                                           TAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCGGG  >  2:4400911/1‑100
                                                                                                                                                                                                               
ATAAATATCGCAAAGTACCGCCCGAGCCTGTTCATGCTGATATTCCGGTCGGTGCAGTGAGTGATGTGAAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4344714‑4344821
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctgatAAACATATCGCATCAGGCCATTTTCGTTAGCTATTGTCCACGTCAGGCTTTCACATCACTCACTGCACCGACCGGAATATCAGCATGAACAGGCTCGGG  <  NC_000913/4344832‑4344734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.