| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4599652 = | 132 (0.840) | 7 (0.050) | 6/164 | NT | 5.4% | intergenic (‑211/+43) | opgB/yjjA | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble)/putative DUF2501 family periplasmic protein |
| ? | NC_000913 | 4599685 = | 125 (0.860) | intergenic (‑244/+10) | opgB/yjjA | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble)/putative DUF2501 family periplasmic protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GAAAAGGTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4599757‑4599652‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcggcGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTAT > NC_000913/4599685‑4599783 GAAAAGGTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGA > 2:3461307/1‑100 AAAAGGTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGAC < 2:2103265/100‑1 AAAGGTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACG < 1:3649429/100‑1 GTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGC < 1:1871301/100‑1 GTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGC > 1:2456493/1‑100 GTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGC > 2:237347/1‑100 AAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGC > 2:3924433/1‑100 CCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGTCTTT > 2:3554046/1‑100 GCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGG < 1:3924403/100‑1 AACGCCGCGTTTTAGCTGTTACCCGGCTGACGCCGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAATACCAGCTCGCAGGCTTTGGTTTT > 1:307734/1‑100 ACGCCGCGTTTTAGCTGTTACCCGGCTGAGGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTC > 1:573608/1‑100 GCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCGTTTTGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCAC > 1:1880836/1‑100 GCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCAC > 2:2088310/1‑100 ACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGA < 2:922579/100‑1 ACGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGA < 2:75002/100‑1 CGCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGAT < 1:1217715/100‑1 GCGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATG < 1:1156410/100‑1 CGGCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGT < 2:4195357/100‑1 GCGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTA < 1:3685498/100‑1 CGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTAT > 2:3364327/1‑100 GAAAAGGTGAAAACCAAAGCCTGCGATCTGGTGTTAAAACAGGGGCTGAACTTCATTTCCTGAACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4599757‑4599652‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcggcGTTTCGCGGTTCAGGAAATGAAGTTCAGCCCCTGTTTTAACACCAGATCGCAGGCTTTGGTTTTCACCTTTTCTGCCAGCGGAGTTGTTCCGATGTTAT > NC_000913/4599685‑4599783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |