New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4611566 =	164 (1.040)	11 (0.070)	7/170	NT	6.6%	coding (171/606 nt)	osmY	salt‑inducible putative ABC transporter periplasmic binding protein
	?	NC_000913	4611591 =	155 (1.030)					coding (196/606 nt)	osmY	salt‑inducible putative ABC transporter periplasmic binding protein
Rejected: Frequency below cutoff threshold.

ACCGCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4611668‑4611566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCC  >  NC_000913/4611591‑4611686                                                                                                                                                                                                         ACCGCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATG                                                                                                     >  2:1053264/1‑100  CCGCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGG                                                                                                    >  2:4298464/1‑100  CCGCTCAGGGTCACCACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGG                                                                                                    <  2:2856981/100‑1   CGCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGC                                                                                                   >  2:841440/1‑100   CGCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGC                                                                                                   <  2:1683751/100‑1    GCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGCG                                                                                                  <  1:163385/100‑1    GCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGCG                                                                                                  >  2:2117296/1‑100     CTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGCGn                                                                                                 <  2:3532099/100‑2                                                   TCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCCCTTTCGCGGTGATGGCGGCACTGCTGGATCATGAAAACATCAAGAGCACCGATATCTCTGTAAA                                                   >  1:897007/1‑100                                                     TTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGGGATGGCTGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAca                                                  >  1:1604891/1‑97                                                                         CAGGGCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACC                             >  1:822817/1‑100                                                                         CAGGGCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACC                             >  1:3004100/1‑100                                                                            GGCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTG                          >  2:1888946/1‑100                                                                             GCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGCTATCTCTGTAAAAACCGATCAAAAAATCGTGACCCTG                          >  1:1365499/1‑99                                                                             GCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGA                         >  1:359283/1‑100                                                                             GCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGA                         >  2:2959881/1‑100                                                                             GCCGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGA                         >  1:2032349/1‑100                                                                               CGCCTTCACTTTCGCGGTGATGGCGGCCCTGGTGGATCCTGACAACATCGAGAGCACCGATATCTCTGGAACAACCGATCAAAAAGTAGTGCCCCTCAGC                       >  2:1699945/1‑100                                                                                      ACTTTCGCGGTGATGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCG                <  2:822818/100‑1                                                                                                    GGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCC  <  2:3795442/100‑1                                                                                                                                                                                                         ACCGCTCAGGGTCACGACTTTTTGATCGGTTTTTACAGAGATATCGGTGCTCTTGATGTTGTCATGATCCACCAGGGCCGCCTTCACTTTCGCGGTGATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4611668‑4611566 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCC  >  NC_000913/4611591‑4611686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.