New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 50326	NA (NA)	20 (0.140)	9/164	NT	NA	intergenic (+24/+54)	folA/apaH	dihydrofolate reductase/diadenosine tetraphosphatase
	?	NC_000913	= 50359	NA (NA)					noncoding (33/37 nt)	REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences

GTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/50228‑50326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTGCGCA  <  NC_000913/50359‑50254                                                                                                                                                                                                               GTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCG                                                                                                           <  2:3020659/100‑1  TATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCG                                                                                                           <  2:2153473/99‑1   ATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCC                                                                                                         >  1:4387996/1‑100    TTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCG                                                                                                        <  2:1041866/100‑1     TCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGG                                                                                                       >  2:3913682/1‑100     TCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGG                                                                                                       <  2:2882921/100‑1     TCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGG                                                                                                       >  1:3117798/1‑100     TCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCG                                                                                                        >  1:3969251/1‑99      CAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGA                                                                                                      >  1:2256015/1‑100      CAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGA                                                                                                      >  2:2789399/1‑100      CAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGA                                                                                                      <  2:2435176/100‑1       AGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGAT                                                                                                     >  1:4170719/1‑100       AGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGA                                                                                                      >  1:2797031/1‑99        GCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGAT                                                                                                     >  2:650453/1‑99           AATTCCACGATGCTGATGCGAAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGAT                                                                                                     >  1:2688793/1‑96                        TGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGAT‑‑‑‑‑GCGACCGGCGTCGCATC                                                                               <  2:949477/100‑1                           TGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGAT‑‑‑‑‑GCGACCGGCGTCGCATCCGG                                                                            <  1:971441/100‑1                              GCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCC                                                                              <  2:2864555/100‑1                              GCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCC                                                                              >  2:2250613/1‑100                                 GAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGTTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGC                                                                           <  1:3973473/100‑1                                  AACGCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGa                                                                           <  1:398663/99‑2                                   ACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGC                                                                         <  1:1493036/100‑1                                   ACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGC                                                                         <  1:3321569/100‑1                                   ACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGC                                                                         <  2:3470937/100‑1                                   ACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGC                                                                         <  2:3282805/100‑1                                    ctaTCACAGTTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGC                                                                         <  1:230810/96‑1                                    CTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCT                                                                        <  2:1263058/100‑1                                    CTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCT                                                                        <  2:2003423/100‑1                                    CTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCT                                                                        <  2:3330286/100‑1                                    CTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCT                                                                        <  1:2250603/100‑1                                     ttTCACATCTATTGCTTTGCGATTCTGGAGCGGCGGTAATTTTGCATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCTGCGCT                                                                        <  1:2133156/97‑1                                      CTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGGAATTTTGTATACAATGTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCT                                                                        <  1:2921246/98‑1                                        CACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCn                                                                    <  2:2119354/100‑2                                        CACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCC                                                                    <  1:205570/100‑1                                            GCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTGGTATAGAATTTACGGCTAGCGCCGGATAAGACGCGACGGGCGTCGCATCCGGCGCTAGC                                                                     <  1:78920/95‑1                                                                                                    GCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCACAGCTATTGCTTTGAGAttct        <  1:512487/100‑5                                                                                                    GCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCACAGCTATTGCTTTGAGAttct        <  2:4361242/100‑5                                                                                                    GCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTC        <  1:449775/100‑1                                                                                                     CCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCT       >  1:3732893/1‑100                                                                                                     CCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCT       <  2:1635377/100‑1                                                                                                     CCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCT       >  2:4068892/1‑100                                                                                                     CCGGATAAGACGCGACCGCCGTCGCATCCGGCGCTATCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCT       <  1:2631993/100‑1                                                                                                      CGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTG      <  2:1427221/100‑1                                                                                                       GGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTCTACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGCGAGTTCTGC     >  1:2114526/1‑100                                                                                                        GATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTGCG    >  2:2543390/1‑100                                                                                                        GATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTGCG    <  2:672076/100‑1                                                                                                         ATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTGCGC   <  1:3915747/100‑1                                                                                                          TAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTGCGCA  <  1:3313746/100‑1                                                                                                                                                                                                               GTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/50228‑50326 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGACGCGACCGGCGTCGCATCCGGCGCTAGCCGTAAATTCTATACAAAATTACCGCCGCTCCAGAATCTCAAAGCAATAGCTGTGAGAGTTCTGCGCA  <  NC_000913/50359‑50254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.