New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 213635	NA (NA)	16 (0.110)	9/164	NT	NA	noncoding (4/37 nt)	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 213668	NA (NA)					noncoding (37/37 nt)	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences

CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/213537‑213635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  <  NC_000913/213668‑213563                                                                                                                                                                                                               CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAG                                                                                                           <  2:983407/100‑1   GATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCC                                                                                                         >  1:1040791/1‑100   GATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCC                                                                                                         <  1:2001240/100‑1   GATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCC                                                                                                         >  1:3494985/1‑100    ATTGCGGCGGCAGGGGTATTTGTGACGCATGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTCTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCG                                                                                                        <  1:2645866/100‑1    ATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCG                                                                                                        <  1:3954435/100‑1      TGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGA                                                                                                      <  2:1611198/100‑1      TGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGA                                                                                                      >  1:4388661/1‑100      TGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGG                                                                                                       <  1:1718455/99‑1      TGCGGCGGCAGGGGCATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCCTACTTAAGTGAAAGCCG                                                                                                        >  1:2612888/1‑98       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     <  1:440155/100‑1       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     <  2:925830/100‑1       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     <  2:3702873/100‑1       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     <  1:493828/100‑1       GCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGAT                                                                                                     <  1:4174421/100‑1                              GCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCC                                                                              <  2:1345160/100‑1                               CAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCG                                                                             <  2:3671484/100‑1                                AAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGG                                                                            <  1:4054074/100‑1                                AAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGG                                                                            <  1:1920108/100‑1                                 AGAAGGTGTGGTTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTGAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTAGCCGGC                                                                           <  2:1155854/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  2:3080681/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  2:191613/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  2:1042066/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  1:78808/100‑1                                 AGAAGGTGTGGCTGAAGGTGAGAATGACGTAAGTTTTGTCTGGCAGAGAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGC                                                                           <  1:1018313/100‑1                                  GAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCT                                                                          <  1:3335699/100‑1                                   AAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTT                                                                         <  1:486061/100‑1                                   AAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTT                                                                         <  1:1340846/100‑1                                       TGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCAC                                                                     <  1:2960987/100‑1                                        gttGCTGAAGGTGAGAATTGCGTAAGTTTTGTCTGGCAGAAAACGCTTATTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACT                                                                    <  2:3427926/97‑1                                              GAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTA                                                              <  2:4310473/100‑1                                                                                                    GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCT        >  1:1825697/1‑100                                                                                                    GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCT        >  1:4314011/1‑100                                                                                                    GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCT        >  2:478707/1‑100                                                                                                     ctaGATGCGACGTTTGTTTCGTCTTATCCGGCTTTCACTTAACTAATCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTT       <  1:3866726/97‑1                                                                                                     CCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTT       <  2:1958370/100‑1                                                                                                      CGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTG      <  2:423181/100‑1                                                                                                      CGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTG      <  2:2847183/100‑1                                                                                                       GGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGC     >  1:103812/1‑100                                                                                                        cATGCGACGTTTGATGCGTCTTAGCCGGCTTTCACTTAACTCAGCCTTTTCTGCCAGACAAAACTTACGCCATTCTCACCGTCAGCCACACCTTCTTGCG    <  1:3429972/99‑1                                                                                                        GATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCG    <  2:1363641/100‑1                                                                                                        GATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCG    <  2:125464/100‑1                                                                                                        GATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCG    <  1:2779376/100‑1                                                                                                        GATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCG    <  1:3136411/100‑1                                                                                                         ATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGT   <  1:4357465/100‑1                                                                                                          TGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACGCCTTCTTGCGTC  <  2:2899800/100‑1                                                                                                          TGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  <  2:2695677/100‑1                                                                                                          TGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  >  2:3457948/1‑100                                                                                                          TGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  >  1:3319770/1‑100                                                                                                          TGCGACGTTTGATGCGTCTTATCCGGCTTTCACATATCTAAGCGTTTTCTGCCAGACAAGACTTACGCCATTATCATCTTCTGCCACACCTTCTTGCGTC  <  1:2017464/100‑1                                                                                                                                                                                                               CTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/213537‑213635 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGTTTGATGCGTCTTATCCGGCTTTCACTTAACTAAGCGTTTTCTGCCAGACAAAACTTACGCCATTCTCACCTTCAGCCACACCTTCTTGCGTC  <  NC_000913/213668‑213563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.