New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 349938NA (NA)34 (0.240) 8/164 NT NA noncoding (334/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 = 349969 NA (NA)noncoding (365/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

CTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/349840‑349938
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGCGA  <  NC_000913/349969‑349866
                                                                                                                                                                                                           
CTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGG                                                                                                         >  2:500744/1‑100
CTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGG                                                                                                         <  2:1759000/100‑1
CTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGG                                                                                                         >  2:1401434/1‑100
 TGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGT                                                                                                        <  2:2218665/100‑1
    AGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGG                                                                                                     <  2:2952000/100‑1
     gggCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGAAGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGCAGGTCGGA                                                                                                    >  1:3761877/4‑100
     GGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGA                                                                                                    >  2:400588/1‑100
     GGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGA                                                                                                    >  2:2802279/1‑100
     GGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGA                                                                                                    >  1:1915625/1‑100
      GTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGAT                                                                                                   <  2:2784097/100‑1
                 cggatgGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATG                                                                                        <  2:3521363/94‑1
                   cacAGCGCCGAACCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATG                                                                                        <  1:3077849/95‑1
                         GTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTAT                                                                                <  1:1248633/100‑1
                          TCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATC                                                                               <  2:74372/100‑1
                          TCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATC                                                                               <  2:3526086/100‑1
                          TCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATC                                                                               <  2:2940525/100‑1
                          TCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATC                                                                               <  1:543924/100‑1
                          TCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATC                                                                               <  2:3321906/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGACCTGTAGGTCGGATGCGACGCTATGCGTCTTACCC                                                                              <  1:2572789/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:4053685/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  2:317534/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATAAGACGCTATGCGTCTTATCC                                                                              <  2:3021718/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:1728153/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  2:2765910/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:1477892/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:4185621/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:1401428/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:1104072/100‑1
                           CGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  2:371633/100‑1
                            GCATCCGACAGCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCC                                                                              <  1:1536863/99‑1
                            GCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCG                                                                             <  2:3962610/100‑1
                             CATCCGACAACCGATGCCTGATGCGCCTCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCG                                                                             <  1:299354/99‑1
                             CATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGA                                                                            <  1:2852903/100‑1
                             CATCCGACAACCGATGCCTGACGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTCAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCG                                                                             <  2:3288035/99‑1
                              ATCCGACAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGAC                                                                           <  1:1259340/100‑1
                              ATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGAC                                                                           <  2:3865597/100‑1
                              ATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGAC                                                                           <  1:4018141/100‑1
                              ATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGA                                                                            <  1:455212/99‑1
                              ATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGA                                                                            <  1:455076/99‑1
                              ATCAGACATCCGACGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTTCGGGGTGAACTGAACTGTAGGTCGGATAAGACGCTATGCGTCTTATCC                                                                              <  1:4246905/97‑1
                               TCCGACAGCCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGACC                                                                          <  1:1730983/100‑1
                               TCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTAGCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGACC                                                                          <  2:2435058/100‑1
                                 CGACAACCGATGCCTGATGCGCTGCTGACGCTACTTATCAGGCCTACGGGGTGAACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGACCT                                                                         <  2:3829017/99‑1
                                    CAACCGATGCCTGATGCGCCGCTGACGTGACTTATCAGTCCTACGGGGTGCACTGAACTGTAGGTCGGATGCGACGCTATGCGTCTTATCCGACCTACAG                                                                     <  1:4390940/100‑1
                                                                                                   GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGAT      >  2:193019/1‑100
                                                                                                   GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGAT      <  2:3425971/100‑1
                                                                                                   GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGAT      >  2:1275164/1‑100
                                                                                                   GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGAT      >  2:2601955/1‑100
                                                                                                   GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGA       >  1:1664206/1‑99
                                                                                                    TCGTATGCGACGCTATGCGGCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGTCTGATAAGTCGCGTCAGCGTCGCATCAGGCATCGGTTGTCGGATG     <  1:3083457/100‑1
                                                                                                    TCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATG     <  1:97827/100‑1
                                                                                                     CGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGC    >  2:3063449/1‑100
                                                                                                      GGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGCG   >  2:3537718/1‑100
                                                                                                      GGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGCG   >  2:2173992/1‑100
                                                                                                      GGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGCG   >  2:1442477/1‑100
                                                                                                      GGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGC    <  1:1082903/99‑1
                                                                                                       GATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGCGA  >  1:3423638/1‑100
                                                                                                                                                                                                           
CTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACAACCGATGCCTGATGCGCCGCTGACGCGACTTATCAGGCCTACGGGGTGAACTGAACTGTAGgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/349840‑349938
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACCCCGTAGGCCTGATAAGTCGCGTCAGCGGCGCATCAGGCATCGGTTGTCGGATGCGA  <  NC_000913/349969‑349866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.