New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	409056 =	NA (NA)	19 (0.130)	10/164	NT	NA	noncoding (5/37 nt)	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	409089 =	NA (NA)					intergenic (+139/+19)	ykiA/rdgC	pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function

GCAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/409161‑409056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  >  NC_000913/409089‑409187                                                                                                                                                                                                               GCAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTA                                                                                                           <  2:3003236/100‑1 GCAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTA                                                                                                           <  1:2491498/100‑1  gAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGGGAAGCACAACGTTAAGTGCTGATTTTCCTTTAATTCCGGATGCGACGCCTGCCGCGTCTTAT                                                                                                          >  1:1466059/2‑100  CAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTAT                                                                                                          >  1:1688655/1‑100  CAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTAT                                                                                                          >  1:3232061/1‑100   AGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATC                                                                                                         <  2:2027786/100‑1   AGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATC                                                                                                         <  1:3450995/100‑1    GCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCC                                                                                                        <  2:1372999/100‑1    GCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCC                                                                                                        <  2:3817017/100‑1     CGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCG                                                                                                       >  2:3154111/1‑100      GTTAATTCAAAACTTTACTGAAGGATTAGGTGGCGACGCACAACGCTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      >  1:761290/1‑100      GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      <  2:463671/100‑1      GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      <  2:577296/100‑1      GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      <  1:1887859/100‑1      GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      >  2:1903226/1‑100      GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      <  1:575993/100‑1      GTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGAGTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGG                                                                                                      >  1:2826630/1‑100                                                      ATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCT                                                      >  1:881828/1‑100                                                             ATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCA                                               >  1:2126907/1‑100                                                                 TCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTT                                           >  2:508729/1‑100                                                                 TCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTT                                           >  2:1479596/1‑100                                                                    TTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTG                                        >  1:1399922/1‑100                                                                    TTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTG                                        >  2:1880645/1‑100                                                                    TTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTG                                        >  2:1968570/1‑100                                                                     TTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGA                                       >  1:950895/1‑100                                                                     TTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGA                                       >  2:536480/1‑100                                                                       AATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAT                                     >  1:3737607/1‑100                                                                       AATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAT                                     >  2:226646/1‑100                                                                       AATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGCTGTGCTTCGCCACCTAATCCTTCAATCAGGATTTGAAT                                     >  1:2590092/1‑100                                                                        ATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCGTTAAAGGAAAATCAGCAATTAACGTTGTGCCTCGCCACCTAATCCTTCACTCAGGTTTTGAA                                      >  1:3827112/1‑98                                                                         nGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA                                   >  1:2072890/2‑100                                                                         TGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA                                   >  2:2294423/1‑100                                                                         TGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTA                                   >  2:3461704/1‑100                                                                          GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAA                                  >  2:3096631/1‑100                                                                          GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGGTTTGAATTAA                                  >  1:3376654/1‑100                                                                           CCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAAC                                 >  1:212568/1‑100                                                                                                   TATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGG         <  2:881831/100‑1                                                                                                     TCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGAT       <  2:431329/100‑1                                                                                                     TCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGAT       >  2:2616857/1‑100                                                                                                      CCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATG      <  1:2023823/100‑1                                                                                                      CCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATG      <  1:2023589/100‑1                                                                                                       CGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGA     <  2:1057740/100‑1                                                                                                       CGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGA     <  2:4043387/100‑1                                                                                                       CGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGA     <  2:657144/100‑1                                                                                                         GCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGCCATCAGGATGAAA   >  2:2003505/1‑100                                                                                                          CATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  <  2:379684/100‑1                                                                                                                                                                                                               GCAGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/409161‑409056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAAAT  >  NC_000913/409089‑409187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.