| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1069018 = | 128 (0.810) | 20 (0.140) | 10/164 | NT | 15.0% | coding (822/1329 nt) | rutG | pyrimidine permease |
| ? | NC_000913 | 1069048 = | 108 (0.750) | coding (792/1329 nt) | rutG | pyrimidine permease | |||||
TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1069123‑1069018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgaccTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGC > NC_000913/1069048‑1069146 TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 2:471247/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 2:2890024/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:216275/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 2:2819659/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:395240/100‑1 TCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGA < 1:4210238/100‑1 CACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATG > 2:3067352/1‑100 CACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATG > 1:4186481/1‑100 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGAC > 2:2534372/1‑100 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGAC > 2:865662/1‑100 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGAC > 2:759369/1‑100 TCCTGCTTTTAATGGTTAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTATGTCATCTCAAGGCAGTCGCCGGGATGACC < 2:3985928/100‑1 TCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC < 2:3883120/100‑1 CGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCG > 2:2842507/1‑100 GCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCCCCATCATTGCCTGA > 1:1829795/1‑97 AACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATCGCCTGACCATTAAAA > 2:4339018/1‑100 ACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAG > 2:3372021/1‑100 ACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAG > 2:3283748/1‑100 ACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAG > 2:3182642/1‑100 CTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCAACCAGAATCACAGACAAGGGCGCAATCAGGATCATTGCCTGACCAGTAAAAGC > 1:1079299/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 1:1395688/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 2:732670/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 2:1399566/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 2:2735096/1‑100 AGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGG > 1:3133517/1‑100 nGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 2:1582694/2‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 1:2771275/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 2:3073605/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 2:1024122/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 1:2290220/1‑100 GTCATCTCAAGGCAGTCGCCGGGATGACCTAAGCTTTCCGCCACCAGAATCACCGCCACGGCCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAG > 2:44131/1‑100 ATCCCAAGGCAGTCGCCGGGCTGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTACCTGACCATTAAAAGCAGGAG > 1:208236/1‑97 CAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTn < 1:1582687/100‑2 GACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCA > 2:1359713/1‑100 ACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAG < 2:3507034/100‑1 ACCTAAGTTTTCCGCCACCAGAATCACCGACACGGGCGAAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAG < 1:2005907/100‑1 CCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCACTCACCATCATTGCCTGACCATTAAAAGCAGGCGCGGAAAACTTTGGCAGACCGAACCAG > 1:221335/1‑99 CCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGG < 2:3510431/100‑1 CCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGG > 2:4197817/1‑100 CCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGG > 1:241835/1‑100 CCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTCGCAGACCGAAC > 1:4210574/1‑96 CTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGC > 2:1417821/1‑100 TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1069123‑1069018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgaccTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGC > NC_000913/1069048‑1069146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |