New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3139625 =NA (NA)28 (0.190) 12/164 NT NA noncoding (5/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3139655 = NA (NA)noncoding (35/83 nt) REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 266 total aligned reads displayed.

AGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT  >  NC_000913/3139526‑3139724
                                                                                                   |                                                                                                   
cactgcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattg                                                                                                     >  1:3353320‑M1/100‑100 (MQ=255)
cactgcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattg                                                                                                     <  1:3431418‑M1/1‑1 (MQ=255)
cactgcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattg                                                                                                     <  1:3828245‑M1/1‑1 (MQ=255)
aGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAgg                                                                                                     >  1:2278346/1‑100 (MQ=255)
  ctgcgccaaatggattacgacattaccagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGcc                                                                                                   >  2:372236‑M1/98‑100 (MQ=255)
     ttGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGa                                                                                                <  1:2538912/100‑1 (MQ=255)
      tGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGAt                                                                                               >  2:348699/1‑100 (MQ=255)
       gCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATa                                                                                              >  1:70315/1‑100 (MQ=255)
          tGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAgg                                                                                           <  1:164281/100‑1 (MQ=255)
           gAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGc                                                                                          >  2:4414972/1‑100 (MQ=255)
            aGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCg                                                                                         >  2:2028147/1‑100 (MQ=255)
             gcgcCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGt                                                                                        >  1:3617182/1‑100 (MQ=255)
             gcgcCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGt                                                                                        <  1:4158746/100‑1 (MQ=255)
             gcgcCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGt                                                                                        >  1:1098529/1‑100 (MQ=255)
                  aTGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcg                                                                                   <  2:318825/100‑1 (MQ=255)
                    gACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgcc                                                                                 <  1:4347883/100‑1 (MQ=255)
                     aCGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg                                                                                <  2:2367955/100‑1 (MQ=255)
                      cGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccgc                                                                               >  1:1451685/1‑100 (MQ=255)
                      cGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCAcgccg                                                                                >  1:2911536/1‑99 (MQ=255)
                       gCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCa                                                                              >  1:4281735/1‑100 (MQ=255)
                        ccAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCAt                                                                             >  1:514085/1‑100 (MQ=255)
                         cAGTGATTTCGAGACGAATACGGAGGATAAGCGCCAGGGCTAAAGGGTGGAGTTCGTCGCAGCCAGGCTTGAAGGACGGAGAAGGGGTTTTCGCCGCATc                                                                            >  1:2685613/1‑100 (MQ=255)
                          aGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATGCGGCGTGAAcgccttatcc                                                                           <  1:253199/100‑7 (MQ=38)
                            tGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                         <  2:1736765/100‑1 (MQ=255)
                            tGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTGCGTCGCAGCAAGCCATCCGGGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                         <  1:666251/100‑1 (MQ=25)
                            cagcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCgg                                                                         >  2:4329900‑M1/72‑100 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  1:2108572/1‑100 (MQ=255)
                             gATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        <  2:1152191/100‑1 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        <  1:4190406‑M1/30‑1 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  2:460510‑M1/71‑100 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  2:3155968‑M1/71‑100 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  2:3002186‑M1/71‑100 (MQ=255)
                             agcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                                        >  2:1246089‑M1/71‑100 (MQ=255)
                              gcgcttgatgattagctttcgtaggcctaatatgacgcggcaccgtctcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                       >  2:285043‑M1/70‑100 (MQ=255)
                              gcgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                       >  2:2052381‑M1/70‑100 (MQ=255)
                               tttCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                      >  2:1517102/1‑100 (MQ=255)
                               cgcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                      >  2:4190437‑M1/69‑100 (MQ=255)
                                gcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggtattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                     >  2:1618690‑M1/68‑100 (MQ=255)
                                gcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                     >  2:1027340‑M1/68‑100 (MQ=255)
                                gcgtgatgattagctttcgtaggcctgataagacgcggcagcgtcgcatcaggcattgtgcacgattGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                                     >  1:2321911‑M1/68‑100 (MQ=255)
                                 tCGAGACGAATACGGAAGATAAGCGTGAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                                                    >  2:2687428/1‑100 (MQ=255)
                                 tCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                                                    >  2:1325717/1‑100 (MQ=255)
                                   gagaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGt                                                                  <  1:1816948/100‑1 (MQ=255)
                                   gagaCGAATACGGAAGATAAGCGTCAGGGGCAAGGGTGGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATc                                                                    >  1:2883692/1‑98 (MQ=255)
                                     gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                <  1:1009205/100‑1 (MQ=255)
                                     gaCGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGc                                                                <  2:3811923/100‑1 (MQ=255)
                                       cGAATACGGAGGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGcac                                                              >  1:4231747/1‑100 (MQ=255)
                                            aCGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGc                                                         <  2:4245583/100‑1 (MQ=255)
                                             cGGAAGATAAACGTCAGGGGAAAGAAATAGAGTTCGTCGCAGCAAGCCATCCAAGCCGAATAAGGCGTTCACGCAGCATCCGGCAATCATGcaca                                                             >  1:1239704/1‑95 (MQ=21)
                                              ggAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCt                                                       >  1:2133707/1‑100 (MQ=255)
                                                 aGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGAt                                                    <  1:1230768/100‑1 (MQ=255)
                                                  gATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATg                                                   >  2:1437078/1‑100 (MQ=255)
                                                   aTAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGc                                                  <  2:1912988/100‑1 (MQ=255)
                                                    tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                 >  2:1415916/1‑100 (MQ=255)
                                                    tAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCg                                                 >  2:731262/1‑100 (MQ=255)
                                                     aaGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGa                                                <  2:1872975/100‑1 (MQ=255)
                                                      aGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAATCGTGCACAATGACTGATGCGAc                                               >  1:3918191/1‑100 (MQ=255)
                                                         gTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCt                                            >  1:249557/1‑100 (MQ=255)
                                                            aGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGcc                                         >  1:3055685/1‑100 (MQ=255)
                                                             ggggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcg                                        <  2:2157368/100‑1 (MQ=255)
                                                              gggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgc                                       >  1:1402077/1‑100 (MQ=255)
                                                               ggTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGTCTGATGCGACGCTGCcgcg                                      <  2:271991/100‑1 (MQ=255)
                                                                gTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAGGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCcgcg                                      >  1:3752280/1‑99 (MQ=255)
                                                                 tAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTc                                    <  2:3020518/100‑1 (MQ=255)
                                                                  aaGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCt                                   <  2:1961568/100‑1 (MQ=255)
                                                                      gTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCGGCAGCGTcgcatc                               <  1:3526008/100‑6 (MQ=25)
                                                                       ttGGTGTACGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCACCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCa                              <  2:2478921/100‑1 (MQ=255)
                                                                          gtgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGc                           <  1:282460/100‑1 (MQ=255)
                                                                          gtgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGc                           <  2:4101225/100‑1 (MQ=21)
                                                                           tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGcc                          <  1:2992615/100‑1 (MQ=255)
                                                                           tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCACGTCTTATCAGGcc                          >  1:3570889/1‑100 (MQ=255)
                                                                           tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGCCGTTCCCGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGca                          <  2:2883709/100‑2 (MQ=21)
                                                                            gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCt                         <  2:3946245/100‑1 (MQ=255)
                                                                            gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcat                         <  2:2916066/100‑3 (MQ=21)
                                                                            gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcat                         <  1:906813/100‑3 (MQ=21)
                                                                             ttCGTCGCAGCAAGCCATCCAGTCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGc                           <  1:1352672/97‑1 (MQ=255)
                                                                              tcgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATAAGACGCGGCAGCGTCGCATCAGGcattg                       <  1:748063/100‑5 (MQ=18)
                                                                               cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACg                      >  1:3721788/1‑100 (MQ=255)
                                                                               cgtcgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACg                      >  2:3962824/1‑100 (MQ=255)
                                                                                  cgCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGaaa                   >  2:2324802/1‑100 (MQ=255)
                                                                                   gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                  <  1:82920/100‑1 (MQ=255)
                                                                                   gcagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAg                  >  2:3889073/1‑100 (MQ=255)
                                                                                    cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                 <  2:963103/100‑1 (MQ=255)
                                                                                    cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                 <  2:3350076/100‑1 (MQ=255)
                                                                                    cagcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGc                 >  2:3096362/1‑100 (MQ=255)
                                                                                     agcaAGCCCTCCAGGCCGGATAAGGCGATCACGCCGCACCCGGCAAACGTGCACGATGCCTGCTGCGCCCCTGCCGCGTCTTATCAGGCCTACGACAGCt                >  1:3907902/1‑100 (MQ=18)
                                                                                     agcaAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCt                <  2:3570172/100‑1 (MQ=255)
                                                                                        aaGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCTGCAATCGTGCACAATGCCTGATGCGACGCTGCCGAGGCTTATCAAGCCTACGAAAGCTa               >  1:2079998/1‑98 (MQ=21)
                                                                                         aGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatc            >  1:1841553/1‑100 (MQ=255)
                                                                                            cacgattGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAatcatc         <  1:177263‑M1/93‑1 (MQ=255)
                                                                                            cATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAat             >  1:3659876/1‑96 (MQ=255)
                                                                                             aTCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAAtcatca        <  1:3265352/100‑1 (MQ=255)
                                                                                               ccAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcg      >  2:643022/1‑100 (MQ=255)
                                                                                                cAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc     >  2:1824333/1‑100 (MQ=255)
                                                                                                attGCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgc     <  2:1748462‑M1/97‑1 (MQ=255)
                                                                                                 aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgcg    >  2:1009227/1‑100 (MQ=255)
                                                                                                 aGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCAcgcg    >  2:2572473/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGCCGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc   >  1:4195427/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACgcgc   >  2:3440673/1‑100 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGAACGCCTTATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCt  <  2:505330‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGCAGTTGCATGAGCGCCATGACGCCAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGTGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT  >  NC_000913/3139526‑3139724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.