| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3428910 = | 18 (0.110) | 13 (0.090) | 6/168 | NT | 28.0% | intergenic (‑148/‑326) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| ? | NC_000913 | 3428937 = | 50 (0.340) | intergenic (‑175/‑299) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein | |||||
ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428811‑3429009 | acgtgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg < 2:3858098‑M1/1‑1 (MQ=255)acgtgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg < 1:3821213‑M1/1‑1 (MQ=255) cgtgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 2:4209291‑M1/99‑100 (MQ=255) cgtgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc < 2:4053820‑M1/2‑1 (MQ=255) gtgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg > 2:1426756‑M1/98‑100 (MQ=255) gtgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg < 1:391767‑M1/3‑1 (MQ=255) tgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:4343577‑M1/4‑1 (MQ=255) tgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:3958691‑M1/4‑1 (MQ=255) tgaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:3945242‑M1/4‑1 (MQ=255) naaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 2:2240482‑M1/5‑1 (MQ=255) gaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 2:794422‑M1/5‑1 (MQ=255) gaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 2:1805142‑M1/96‑100 (MQ=255) gaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:1329466‑M1/96‑100 (MQ=255) gaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:3860728‑M1/5‑1 (MQ=255) gaaacacttcacaggatggtcggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:1933920‑M1/5‑1 (MQ=255) cggaacaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCG‑CTTT‑AGCGCACTGTcgc > 2:28436‑M1/76‑100 (MQ=255) ttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGa > 1:3311298‑M1/72‑100 (MQ=255) acaacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGa > 1:275306‑M1/72‑100 (MQ=255) cggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 2:1700340‑M1/70‑100 (MQ=255) aacgaagagaaaaaaatcctgaaattccgggttgacgctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 1:3521080‑M1/70‑100 (MQ=255) aacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAgg > 1:4304195‑M1/70‑100 (MQ=255) ggttgaagagaaaaaccctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGt > 2:4347050‑M1/69‑100 (MQ=255) gttgaagagaaaaatccggaaatgcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGt > 2:2060212‑M1/68‑99 (MQ=255) ggtgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTg > 1:5080‑M1/68‑100 (MQ=255) cgaagagaaaaaaatcctgaaattcagggttgcctctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTg > 1:421333‑M1/68‑100 (MQ=255) cgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTg < 1:1827246‑M1/33‑1 (MQ=255) cgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTg > 1:645254‑M1/68‑100 (MQ=255) gagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGt > 2:1827253‑M1/64‑100 (MQ=255) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt > 1:2136221/1‑100 (MQ=31) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt > 2:1334783/1‑100 (MQ=31) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt > 1:2138529/1‑100 (MQ=31) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAttttttt < 2:4209083/100‑1 (MQ=31) ttAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCACAGTCAACCCTGAATTTCAGGAttttttt > 1:3292382/1‑100 (MQ=14) tAAAGAGCAGTTGCGACGCGGCTTTCATCTCACTGTCGCGAGCTCGCGTATCTTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 1:3513374/100‑1 (MQ=11) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc > 2:2613067/1‑100 (MQ=32) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 2:3552020/100‑1 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 2:1030450/1‑100 (MQ=33) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct > 1:2083887/1‑100 (MQ=33) agagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTctct < 2:4269120/100‑1 (MQ=35) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt < 2:1406443/100‑1 (MQ=38) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt > 1:621136/1‑100 (MQ=35) agCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTc > 1:987035/1‑100 (MQ=38) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 2:1306288/100‑1 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg > 1:700395/1‑100 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 1:1900249/100‑1 (MQ=40) gCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCg < 2:3546044/100‑1 (MQ=40) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:758968/100‑1 (MQ=40) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:4364740/100‑1 (MQ=40) aGTTGCGACGCGGCTTTCAGCTCAGTGTCGCGAGGTGGCGTATAGTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtt < 1:495443/100‑1 (MQ=255) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtt < 2:3423521/100‑1 (MQ=255) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtt > 2:3215714/1‑100 (MQ=255) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtt < 1:1548638/100‑1 (MQ=40) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTTTCTTTgttt > 1:2274938/1‑99 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtgg < 2:2990977/100‑3 (MQ=255) gTTGCAACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCATAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTcc < 1:2510279/97‑2 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgtt > 1:2420535/1‑100 (MQ=255) GCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc > 2:1983502‑M1/1‑100 (MQ=255) GCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc > 2:4389263‑M1/1‑100 (MQ=255) | ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428811‑3429009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |