New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3546221NA (NA)16 (0.110) 7/166 NT NA intergenic (+22/‑338) nfuA/gntT Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system
?NC_000913 = 3546253 NA (NA)noncoding (32/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 212 total aligned reads displayed.

CTGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC  >  NC_000913/3546122‑3546320
                                                                                                   |                                                                                                   
ctgctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGAtt                                                                                                     <  1:1029704/100‑1 (MQ=255)
ctgctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGAtt                                                                                                     >  1:4348511/1‑100 (MQ=255)
 tgctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTg                                                                                                    >  1:3480346‑M1/1‑99 (MQ=255)
  gctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTg                                                                                                    <  1:3698104‑M1/99‑2 (MQ=255)
      nacGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga                                                                                               >  2:2731923‑M1/2‑94 (MQ=255)
      aaCGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga                                                                                               >  1:2574417‑M1/1‑94 (MQ=255)
         gAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGc                                                                                            >  2:1901964/1‑100 (MQ=255)
           aTTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGa                                                                                          >  2:3919111/1‑100 (MQ=255)
           aTTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGa                                                                                          >  1:1988628/1‑100 (MQ=255)
              cccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGAc                                                                                         <  1:310642/98‑1 (MQ=255)
              cccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGc                                                                                       >  2:2882683/1‑100 (MQ=255)
               ccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCt                                                                                      <  2:1460299/100‑1 (MQ=255)
               ccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCt                                                                                      >  2:717159/1‑100 (MQ=255)
               ccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCt                                                                                      <  2:1770371/100‑1 (MQ=255)
                   aGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAg                                                                                  <  1:3651504/100‑1 (MQ=255)
                     cTGAAAGGTGTGCGCGAGCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCg                                                                                <  2:3167140/100‑1 (MQ=255)
                       gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                              <  2:1947500/100‑1 (MQ=255)
                       gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                              >  2:4398231/1‑100 (MQ=255)
                         aaGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCAt                                                                            >  1:846533/1‑100 (MQ=255)
                            gtgtGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTC                                                                         >  1:3765‑M2/1‑100 (MQ=255)
                            gtgtGCGCGATATCACCGAACACCAGCGCGGGGAAGACTCCTACTACTAAGTGATCCCCGCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                              <  1:1727008/95‑1 (MQ=255)
                            gtgtGCGCGAGCTCACCGAACAACAGCGCGGCGAACGCTCCTACTACTAAGGTATCCCCGCTTTTGTAGATTGCCCGAGGCGACGCTAAAGCGTCATTTc                                                                         <  1:1832460/100‑1 (MQ=255)
                              gtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGG                                                                       >  2:4170134‑M2/1‑100 (MQ=255)
                              gtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGG                                                                       >  2:311615‑M2/1‑100 (MQ=255)
                               tgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcggg                                                                      <  1:60391‑M1/100‑32 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTGCTACTACTAAGTTATCCCCTCTTTTGTAGATTgccctaaatgacgctttagcgtcgcatcgggc                                                                     <  1:1994625‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  2:2132‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  2:2293516‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  1:556785‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  1:3054962‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  2:327719‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGTGACGCTAAAGCGTCATTTCGGGC                                                                     <  2:330909‑M2/100‑1 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGC                                                                     <  2:3173139‑M2/100‑1 (MQ=255)
                                 cgcgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggca                                                                    <  1:551757‑M1/100‑34 (MQ=255)
                                  gcgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggcaa                                                                   <  1:927440‑M1/100‑35 (MQ=255)
                                   cgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTa                                                                  <  2:3671134/100‑1 (MQ=255)
                                     aTCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACg                                                                <  2:397258/100‑1 (MQ=255)
                                      tctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggcaatcta                                                               <  1:932837‑M1/100‑39 (MQ=255)
                                      tctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGt                                                               <  2:3864187/100‑1 (MQ=255)
                                       ctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGtt                                                              <  1:3980731/100‑1 (MQ=255)
                                        tcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTg                                                             <  2:2157219/100‑1 (MQ=255)
                                           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                            >  2:3599951/1‑98 (MQ=255)
                                           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                          >  1:2021969/1‑100 (MQ=255)
                                           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                          >  2:2353314/1‑100 (MQ=255)
                                           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                          <  1:2199573/100‑1 (MQ=255)
                                            cGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACa                                                         <  1:3200059/100‑1 (MQ=255)
                                                cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                     <  2:3034813/100‑1 (MQ=255)
                                                cacCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACAtgtg                                                     <  2:2710228/100‑1 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                   >  1:3911115/1‑100 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                   >  1:4185505/1‑100 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGc                                                    >  1:1595159/1‑99 (MQ=255)
                                                    aGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAg                                                 <  1:1078694/100‑1 (MQ=255)
                                                     gcgcGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGa                                                <  1:686336/100‑1 (MQ=255)
                                                     gcgcGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGa                                                <  2:2781819/100‑1 (MQ=255)
                                                         ggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGtt                                            <  2:65767/100‑1 (MQ=255)
                                                         ggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGtt                                            >  1:1563593/1‑100 (MQ=255)
                                                         ggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGtt                                            >  1:2522995/1‑100 (MQ=255)
                                                          gcgAAGACTCCTACTACTCAGTTATACGCTCTTTTGTTAATTACCCGATTCGGCGCTATTGCGTCATTTCGGGCATACGTTGAACATGCGGAAGACg                                              >  1:3585249/1‑97 (MQ=255)
                                                          gcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTg                                           >  1:3414288/1‑100 (MQ=255)
                                                          gcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTg                                           >  1:3304515/1‑100 (MQ=255)
                                                           cgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTgg                                          <  2:40615/100‑1 (MQ=255)
                                                               ctttcctACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggcaatctacaaaagaggggataacttagtagt                                       <  1:984954‑M1/96‑63 (MQ=255)
                                                               cacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgca                                      >  1:1449241/1‑100 (MQ=255)
                                                               cacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgca                                      >  2:2613159/1‑100 (MQ=255)
                                                                acTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcag                                     >  1:2966163/1‑100 (MQ=255)
                                                                 cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                    <  2:4300268/100‑1 (MQ=255)
                                                                 cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                    >  2:3746178/1‑100 (MQ=255)
                                                                 cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgca                                      <  1:1255265/98‑1 (MQ=255)
                                                                   ccTACTACTAAGTTATCCCCTCTTTAGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAt                                  <  1:2562431/100‑1 (MQ=255)
                                                                     tactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTg                                >  1:4120757/1‑100 (MQ=255)
                                                                       ctactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCt                              >  2:1759826/1‑100 (MQ=255)
                                                                         actaCGCTATCACCTCTTTTGTAGATTGCTCGATCCGACGCTAGAGCGTAATTTCGGGCATACCTTGGACACGTGCCAGACGTTAGCGCCGCCTCGCtc                             >  1:4396912/1‑98 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGATGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           >  1:2351853/1‑100 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           <  2:3699812/100‑1 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           <  2:863462/100‑1 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           >  1:3279236/1‑100 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           <  1:3169273/100‑1 (MQ=255)
                                                                                   ccccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCt                  >  1:1547168/1‑100 (MQ=255)
                                                                                   ccccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCt                  >  2:1998472/1‑100 (MQ=255)
                                                                                    cctcctTTTCTAGATAGCCCGATGCGACGCTAACGCGTTTTCTCGGGCGTACGTTGAACATGTACTAGACGTTGGCGCAGCATTGCTTTGTCAAATctac                 >  1:1484676/5‑97 (MQ=255)
                                                                                     ccTCTTTTGTAGATTGCCCGATGCGCCGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGCGTGCGCAGCATTGCTTTGTCAAATCCt                  >  1:2660205/1‑98 (MQ=255)
                                                                                      ctctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCgg               <  1:430703/100‑1 (MQ=255)
                                                                                      ctctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCgg               <  2:486657/100‑1 (MQ=255)
                                                                                        ctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGtt             >  2:1197632/1‑100 (MQ=255)
                                                                                        ctTTGGAAGATTGCCCGATGCGAAGCTAAAGCGTCGTTTCGGGCCTACGTTGAACATGTGCCAGAGGTTGGCGCAGCATTGCTTTGTCAAATCCTCgg               <  1:2500872/98‑1 (MQ=255)
                                                                                          tttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGtttg           >  1:3830465/1‑98 (MQ=255)
                                                                                          tttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCg           >  1:2461517/1‑100 (MQ=255)
                                                                                            tGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGtt         >  1:190952/1‑100 (MQ=255)
                                                                                            tGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGtt         <  1:3883980/100‑1 (MQ=255)
                                                                                             gTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGttt        >  2:2154149/1‑100 (MQ=255)
                                                                                              tAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTc       <  1:3134241/100‑1 (MQ=255)
                                                                                               aGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTcc      >  1:2188983/1‑100 (MQ=255)
                                                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCactctacaaaagaggggctaacttagtagcaggagtgttcgccgcgctggtgttcggtgagatc     <  1:2920346‑M2/100‑65 (MQ=255)
                                                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc     >  2:3470711/1‑100 (MQ=255)
                                                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc     >  1:4068402/1‑100 (MQ=255)
                                                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGGTGAACATGTGCCGGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc     >  2:1981804/1‑100 (MQ=255)
                                                                                                  ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagcggggataccttcgtagtaggagtgttcgccgcgctggtgttcggtgagatcgc   <  2:3139923‑M2/100‑67 (MQ=255)
                                                                                                  ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcg   >  1:1238923/1‑100 (MQ=255)
                                                                                                  ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcg   >  2:3273967/1‑100 (MQ=255)
                                                                                                   tGCCCGATGCGACGCTAAAGCGTAATTTCGGGCCGACGTTGAACATGTGCCAGTCGTTGGCGCAGCATTGCTTTGTCAGATCCTCGGTTCGTATCCCcgc  <  1:2857893/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CTGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC  >  NC_000913/3546122‑3546320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.