New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3555802NA (NA)19 (0.130) 10/162 NT NA noncoding (7/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3555812 NA (NA)noncoding (17/24 nt) REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences REP255 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 239 total aligned reads displayed.

CTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTC  >  NC_000913/3555704‑3555901
                                                                                                  |                                                                                                   
    aTCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAcgc                                                                                                >  2:909222/1‑100 (MQ=255)
    aTCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAcgc                                                                                                <  2:1837785/100‑1 (MQ=255)
      cAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACgcgc                                                                                              >  1:1059219/1‑100 (MQ=255)
      cAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACgcgc                                                                                              >  1:2715911/1‑100 (MQ=255)
       aGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGcc                                                                                             >  2:3310110/1‑100 (MQ=255)
       aGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGcc                                                                                             >  2:2929887/1‑100 (MQ=255)
        gAAACTCGGCGTGGCCCATCGCCAGGATGCGTTACAACTCGCCCAGCAATTGCCGAAGATGATGGGGTACGGCGTGTATGTTTAGCCGGATAACGCGCCa                                                                                            <  1:885889/100‑1 (MQ=255)
        gAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCa                                                                                            <  2:808928/100‑1 (MQ=255)
         aaaCTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAg                                                                                           <  1:2774526/100‑1 (MQ=255)
         aaaCTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAg                                                                                           <  1:2035609/100‑1 (MQ=255)
                gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGTGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggc                                                                                    >  2:1174422‑M2/1‑93 (MQ=255)
                gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggc                                                                                    <  1:1642382‑M1/100‑18 (MQ=255)
                gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggc                                                                                    >  2:3123614‑M2/1‑93 (MQ=255)
                gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggc                                                                                    >  2:1287693‑M2/1‑93 (MQ=255)
                 cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggct                                                                                   <  2:3409611‑M1/100‑19 (MQ=255)
                 cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGatccggct                                                                                   <  1:502349‑M2/100‑9 (MQ=255)
                  gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggcta                                                                                  <  1:3632848‑M1/100‑20 (MQ=255)
                  gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggcta                                                                                  <  2:3182460‑M1/100‑20 (MQ=255)
                   tGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaa                                                                                 <  2:1785134‑M1/100‑21 (MQ=255)
                   tGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaa                                                                                 <  1:3934789‑M1/100‑21 (MQ=255)
                   tGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaa                                                                                 <  2:949404‑M1/100‑21 (MQ=255)
                    ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCACTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                <  1:749646/100‑1 (MQ=255)
                    ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaa                                                                                <  1:1815664‑M1/100‑22 (MQ=255)
                    ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                <  2:1223486/100‑1 (MQ=255)
                     gCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                               >  1:360172/1‑100 (MQ=255)
                      tctatcgCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaact                                                                              <  1:1704134‑M1/97‑24 (MQ=255)
                      cccATCGCCAGGATGGGGTACAACACGCACAGCAATTTCTGAAGATGATGGAGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggc                                                                                    <  1:3711242‑M1/94‑18 (MQ=255)
                      cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaact                                                                              <  2:1019014‑M1/100‑24 (MQ=255)
                      cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAt                                                                              >  1:2494410/1‑100 (MQ=255)
                       ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaactt                                                                             <  2:301489‑M1/100‑25 (MQ=255)
                       ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                             <  1:57228/100‑1 (MQ=255)
                       ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                             >  1:2065280/1‑100 (MQ=255)
                       ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                             <  2:3543468/100‑1 (MQ=255)
                         aTCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaactaga                                                                           >  2:1704141‑M1/1‑74 (MQ=255)
                         aTCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtctc                                                                           <  1:930667/100‑1 (MQ=255)
                          tCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATctct                                                                          >  2:2848617/1‑100 (MQ=255)
                           cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATctggcgcgttatccggctaaacttacac                                                                         <  2:1711570‑M1/100‑29 (MQ=255)
                           cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                         <  1:1940504/100‑1 (MQ=255)
                               aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                                     <  1:3887104/100‑1 (MQ=255)
                                ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatca                                                                    >  2:3709347/1‑100 (MQ=255)
                                 gATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatcat                                                                   <  1:1183757/100‑1 (MQ=255)
                                   tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                                 <  1:2937123/100‑1 (MQ=255)
                                     cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                               <  1:2662907/100‑1 (MQ=255)
                                     cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                               >  1:536321/1‑100 (MQ=255)
                                     cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                               >  2:2871416/1‑100 (MQ=255)
                                       gTACAACACGCCCAGCAATTGCTGAAGATGATGGGTTACGGCGTGTAAGTTTAGCCGTATAACGCGCCAGACCCGGCTTACATCTCTTCATCATTCAATg                                                             <  1:3870764/100‑1 (MQ=255)
                                        tACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGc                                                            <  2:1075480/100‑1 (MQ=255)
                                           aagacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCa                                                         <  1:2086897/97‑1 (MQ=255)
                                            acacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAc                                                        >  1:3642895/1‑100 (MQ=255)
                                              acGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCAccc                                                      >  2:3416631/1‑100 (MQ=255)
                                               cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                                     >  2:2386276/1‑100 (MQ=255)
                                                 cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                   >  1:4195809/1‑100 (MQ=255)
                                                 cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                   >  2:2738271/1‑100 (MQ=255)
                                                 cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                   <  2:3049963/100‑1 (MQ=255)
                                                     gCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                               <  2:600908/100‑1 (MQ=255)
                                                      cAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACg                                              >  2:4371343/1‑100 (MQ=255)
                                                       aaTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGc                                             <  2:4084206/100‑1 (MQ=255)
                                                         ttGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCa                                           >  2:2507984/1‑100 (MQ=255)
                                                            cTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCt                                        >  2:2310666/1‑100 (MQ=255)
                                                             tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                       <  2:253460/100‑1 (MQ=255)
                                                              gAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGt                                      >  2:2135252/1‑100 (MQ=255)
                                                                 gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                   <  2:387223/100‑1 (MQ=255)
                                                                  atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCGTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                   <  1:67852/99‑1 (MQ=255)
                                                                   tgatgGGGTACTGCGTGTAAGTTTAGCCCGATAACGCCCCCGATCCCGCTCCCACCTCTGCATCACTCAATGCCCACCCGCGTTACGCCATCTGTTTc                                   >  1:3381236/1‑98 (MQ=255)
                                                                   tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                  >  1:1393433/1‑99 (MQ=255)
                                                                   tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                 <  1:2276760/100‑1 (MQ=255)
                                                                    gatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTACATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTAt                                <  2:2958355/100‑1 (MQ=255)
                                                                      tgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCa                              <  1:3019524/100‑1 (MQ=255)
                                                                       ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                             <  1:4344878/100‑1 (MQ=255)
                                                                         ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  2:536322/100‑1 (MQ=255)
                                                                         ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:612105/100‑1 (MQ=255)
                                                                         ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:2871399/100‑1 (MQ=255)
                                                                         ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                           <  1:2455086/100‑1 (MQ=255)
                                                                           tACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTa                         <  1:3973851/100‑1 (MQ=255)
                                                                                      aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCgg              <  2:4165925/100‑1 (MQ=255)
                                                                                       gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc             <  1:1249884/100‑1 (MQ=255)
                                                                                       gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc             <  2:2672438/100‑1 (MQ=255)
                                                                                        tttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa            >  2:1050729/1‑100 (MQ=255)
                                                                                          tAGCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggcc            <  1:1718165‑M2/98‑80 (MQ=255)
                                                                                          tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg          <  2:1962315/100‑1 (MQ=255)
                                                                                          tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg          <  1:1137770/100‑1 (MQ=255)
                                                                                          tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg          >  1:4392337/1‑100 (MQ=255)
                                                                                           aGCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacg         <  2:2601531‑M2/100‑83 (MQ=255)
                                                                                           aGCCGGATAACGCGCCAGATCAGGATTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACAGGCAAGa         >  1:3288559/1‑100 (MQ=255)
                                                                                            gCCGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgc        >  1:3500514‑M1/1‑7 (MQ=255)
                                                                                            gCCGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgc        >  2:3863002‑M1/1‑7 (MQ=255)
                                                                                            gCCGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgc        >  1:1115452‑M1/1‑7 (MQ=255)
                                                                                            gCCGGATAACGCGCCAGatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgc        <  1:3127864‑M2/100‑84 (MQ=255)
                                                                                            accGGATAACTCTTTAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTATGCCATCTTTTTTTATCAAACTAAACCGCACCCGCAAGaa        >  1:4038414/2‑100 (MQ=255)
                                                                                             ccGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgcc       <  2:1836792‑M1/100‑95 (MQ=255)
                                                                                             ccGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgcc       >  1:3536820‑M1/1‑6 (MQ=255)
                                                                                              cGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccg      >  2:171840‑M1/1‑5 (MQ=255)
                                                                                              cGGATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccg      <  2:235915‑M1/100‑96 (MQ=255)
                                                                                              cGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAAc      <  2:1472115/100‑1 (MQ=255)
                                                                                                gATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgag    <  2:4060816‑M1/100‑98 (MQ=255)
                                                                                                gATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgag    <  2:1237637‑M1/100‑98 (MQ=255)
                                                                                                gATctggcgcgttatccggctaaacttacacgccgtaccccatcatcttcagcaattgctgggcgtgttgtaccgcatcctggcgatgggccacgccgag    >  1:2860680‑M1/1‑3 (MQ=255)
                                                                                                 aTAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCt   <  1:2132271/100‑1 (MQ=255)
                                                                                                  tAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc  >  2:4350907/1‑100 (MQ=255)
                                                                                                  tAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTc  >  1:341062/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
CTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTC  >  NC_000913/3555704‑3555901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.