New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 117721114 (0.730)20 (0.140) 10/162 NT 15.7% intergenic (‑172/+31) ppdD/nadC putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase
?NC_000913 = 117731 111 (0.780)intergenic (‑182/+21) ppdD/nadC putative prepilin peptidase‑dependent pilin/quinolinate phosphoribosyltransferase

Only 100 of 192 total aligned reads displayed.

ACGGGAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGGAGATAAAGT  >  NC_000913/117623‑117819
                                                                                                  |                                                                                                  
acgGGAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATccgcc                                                                                                   <  1:3666703/100‑1 (MQ=255)
 cgGGAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATccgccc                                                                                                  >  2:1625440/1‑100 (MQ=255)
   ggAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATccgcccgc                                                                                                <  2:6007/100‑1 (MQ=255)
   ggAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATccgcccgc                                                                                                >  1:2849985/1‑100 (MQ=255)
    gAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccat                                                                                               >  1:2955449‑M1/1‑95 (MQ=255)
       aGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATg                                                                                            >  1:3509815/1‑100 (MQ=255)
        gCAGATTGCGTGGTTTTTTTTTTCGTTGCAGCGACAGACAAGAAATCTGCGAGGCGTTACAAAGAACGTTGGGGAAGGGGAGATTATCCGCCCGCGATgg                                                                                           <  1:2015324/100‑1 (MQ=255)
        gCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATgg                                                                                           >  2:2596006/1‑100 (MQ=255)
         cAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGa                                                                                          >  2:2467448/1‑100 (MQ=255)
         cAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGa                                                                                          >  2:3442072/1‑100 (MQ=255)
           gATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAgc                                                                                        <  2:1192701‑M2/100‑3 (MQ=255)
             ttCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAgcgg                                                                                      >  2:1778887‑M2/1‑96 (MQ=255)
               ccGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAgcggat                                                                                    >  2:2016467‑M2/1‑94 (MQ=255)
               ccGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAgcggat                                                                                    >  2:3509839‑M2/1‑94 (MQ=255)
                cGAGGTTTTTTTTTTTTTTTCATCGAAAGACAAGAAATTTGCGAGTCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAgcggat                                                                                    <  1:651075‑M2/99‑7 (MQ=255)
                cGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggata                                                                                   <  1:2304773‑M1/100‑18 (MQ=255)
                 gAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAgcggataa                                                                                  <  1:1090931‑M2/100‑9 (MQ=255)
                  aGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataat                                                                                 <  1:4210939‑M1/100‑20 (MQ=255)
                  aGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataa                                                                                  <  1:1554854‑M1/99‑19 (MQ=255)
                  aGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATaaa                                                                                 <  1:1625433/100‑1 (MQ=255)
                   ggTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataatc                                                                                <  1:4239282‑M1/100‑21 (MQ=255)
                   ggTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAAt                                                                                <  1:4308852/100‑1 (MQ=255)
                   ggTGTTTTATTTCGTTGCAGCGAAAGACAAGAAATTAGCGAGGCGTTACGAAGAAAGTTGGGGGAGGGGAGAATATCCGCCCGCGCTGGAGCGGATAAAt                                                                                >  2:917820/1‑100 (MQ=255)
                    gTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataatct                                                                               <  2:3275470‑M1/100‑22 (MQ=255)
                     ttttttATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataatctc                                                                              <  2:3254371‑M1/100‑23 (MQ=255)
                      tttttATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTg                                                                             <  2:264183/100‑1 (MQ=255)
                      tttttATGTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataatctcc                                                                             <  1:755198‑M1/100‑24 (MQ=255)
                        tttATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCtccatcgcgggcggataatctcccc                                                                           <  1:402513‑M1/100‑26 (MQ=255)
                        tttATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTc                                                                           >  2:1689493/1‑100 (MQ=255)
                           aTTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAAc                                                                        <  1:403127/100‑1 (MQ=255)
                                  tGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAGGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGc                                                                 <  2:1270333/100‑1 (MQ=255)
                                  tGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGc                                                                 <  2:3058823/100‑1 (MQ=255)
                                  tGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGc                                                                 <  1:310091/100‑1 (MQ=255)
                                        gAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAAc                                                           <  2:4412012/100‑1 (MQ=255)
                                        gAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAAc                                                           <  1:2107226/100‑1 (MQ=255)
                                            gACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCAt                                                       >  2:1480731/1‑100 (MQ=255)
                                              cAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTg                                                     <  1:3291858/100‑1 (MQ=255)
                                              cAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTg                                                     <  2:859776/100‑1 (MQ=255)
                                              cAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTg                                                     >  2:18164/1‑100 (MQ=255)
                                                 gAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGaaa                                                  <  1:1707336/100‑1 (MQ=255)
                                                  aaaTTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAg                                                 >  1:517812/1‑100 (MQ=255)
                                                     tttGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTc                                              <  2:2124729/100‑1 (MQ=255)
                                                     tttGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTc                                              <  1:2807892/100‑1 (MQ=255)
                                                      ttGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCg                                             >  1:3206351/1‑100 (MQ=255)
                                                            ggCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCt                                       >  2:337694/1‑100 (MQ=255)
                                                            ggCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCt                                       <  1:19817/100‑1 (MQ=255)
                                                             gCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCtt                                      <  1:137641/100‑1 (MQ=255)
                                                               gTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGt                                    <  1:1147227/100‑1 (MQ=255)
                                                               gTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGt                                    >  2:293627/1‑100 (MQ=255)
                                                                ttACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTa                                   >  2:422016/1‑100 (MQ=255)
                                                                  aCGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACg                                 >  2:2303439/1‑100 (MQ=255)
                                                                  aCGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACg                                 <  2:2614049/100‑1 (MQ=255)
                                                                  aCGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACg                                 <  1:3460810/100‑1 (MQ=255)
                                                                   cGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACgt                                >  2:1881254/1‑100 (MQ=255)
                                                                   cGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACg                                 <  2:3736024/99‑1 (MQ=255)
                                                                    gaagaaAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACgtg                               >  1:2185082/1‑100 (MQ=255)
                                                                    gaagaaAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACgtg                               >  1:4215150/1‑100 (MQ=255)
                                                                    gaagaaAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACgtg                               <  2:1998336/100‑1 (MQ=255)
                                                                      agaaAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGtt                             >  2:3846095/1‑100 (MQ=255)
                                                                      agaaAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGtt                             <  2:2493772/100‑1 (MQ=255)
                                                                       gaaAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGttt                            <  1:2498417/100‑1 (MQ=255)
                                                                        aaaGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTtta                           <  2:3815296/100‑1 (MQ=255)
                                                                         aaGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACTTGTttag                          <  2:2313152/100‑1 (MQ=255)
                                                                            ttGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTttagtta                       >  2:3690720/1‑100 (MQ=255)
                                                                              ggggAAGGGGAGATTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacga                     <  2:2811033‑M2/100‑70 (MQ=255)
                                                                              ggggAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTttagttagn                     <  1:1226091/100‑2 (MQ=255)
                                                                              ggggAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATAGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAgc                     <  1:2642489/100‑1 (MQ=255)
                                                                                ggAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAgcgc                   <  1:1768231/100‑1 (MQ=255)
                                                                                ggAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAgcgc                   <  1:1309934/100‑1 (MQ=255)
                                                                                ggAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAgcgc                   >  2:458597/1‑100 (MQ=255)
                                                                                     gggAGATTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaa              <  2:2808589‑M2/100‑77 (MQ=255)
                                                                                      ggAGATTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaa             <  1:1788919‑M2/100‑78 (MQ=255)
                                                                                      ggAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGAc             >  1:778376/1‑100 (MQ=255)
                                                                                       gagaTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaa            <  1:713965‑M2/100‑79 (MQ=255)
                                                                                       gagaTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaa            <  2:344699‑M2/100‑79 (MQ=255)
                                                                                        agaTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaac           <  1:4146653‑M2/100‑80 (MQ=255)
                                                                                        agaTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaac           <  2:2508929‑M2/100‑80 (MQ=255)
                                                                                        agaTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaac           <  2:3549479‑M2/100‑80 (MQ=255)
                                                                                         gaTTATCCGCCCGCGATGGAgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaa          <  1:614009‑M2/100‑81 (MQ=255)
                                                                                         gaTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacc          <  2:2955466‑M2/100‑81 (MQ=255)
                                                                                         gaTTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGga          >  2:286454/1‑100 (MQ=255)
                                                                                         gaTTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCAGTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGga          <  1:4366628/100‑1 (MQ=255)
                                                                                          aTTATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacct         <  2:4275297‑M2/100‑82 (MQ=255)
                                                                                          aTTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGgag         <  1:4111045/100‑1 (MQ=255)
                                                                                          aTTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGgag         <  2:685438/100‑1 (MQ=255)
                                                                                          aTTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGgag         <  1:921965/100‑1 (MQ=255)
                                                                                           ttATCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctc        <  1:1090931‑M1/100‑93 (MQ=255)
                                                                                           ttATCCGCCCGCGATGGAgcggataatctccccttccccaactttcttcgtagcgcctcgcagatttcctgtctttcactgcaacgaaataaaaaacctc        <  1:2976424‑M2/100‑83 (MQ=255)
                                                                                            tATCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcg       <  2:30398‑M1/100‑94 (MQ=255)
                                                                                             aTCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcgg      <  2:3291877‑M1/100‑95 (MQ=255)
                                                                                             aTCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcgg      >  1:2017826‑M1/1‑6 (MQ=255)
                                                                                             aTCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcgg      >  1:2614995‑M1/1‑6 (MQ=255)
                                                                                             aTCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcgg      <  2:2421399‑M1/100‑95 (MQ=255)
                                                                                             aTCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcgg      >  1:2424990‑M1/1‑6 (MQ=255)
                                                                                             aTCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGGAGATa      <  1:2997475/100‑1 (MQ=255)
                                                                                             aTCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGGAGATa      >  2:1728830/1‑100 (MQ=255)
                                                                                              tCCGCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcgg      <  2:4098924‑M1/99‑95 (MQ=255)
                                                                                              tCCGCCCGCGATGGAGCGGATAAATCTGTCCACTCTTAGCGAAAACGCATTGCACGGTCCAGTGCTTGTACGCGCTTAGTCAGCGCCCCCACGgag         >  1:2561410/1‑96 (MQ=255)
                                                                                                 gcccgcGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGGAGATAAAGt  <  1:4070895/100‑1 (MQ=255)
                                                                                                 gCtccatcgcgggcggataatctccccttccccaactttcttcgtaacgcctcgcaaatttcttgtctttcgctgcaacgaaataaaaaacctcggaatc  <  2:2995588‑M1/100‑99 (MQ=255)
                                                                                                  |                                                                                                  
ACGGGAAAGCAGATTCCGAGGTTTTTTATTTCGTTGCAGCGAAAGACAAGAAATTTGCGAGGCGTTACGAAGAAAGTTGGGGAAGGGGAGATTATCCGCCCGCGATGGAGCGGATAAATCTGTCAACTATTAGCGAAAACGCATTGAAAGGTCGAGTGCTTGTACGTGTTTAGTTAGCGCACCGACGGAGATAAAGT  >  NC_000913/117623‑117819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.