New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 228721 =NA (NA)71 (0.490) 12/166 NT NA intergenic (+59/‑35) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
?NC_000913 228745 = NA (NA)intergenic (+83/‑11) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon

Only 100 of 136 total aligned reads displayed.

GTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACT  >  NC_000913/228622‑228803
                                                                                                   |                                                                                  
nttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTaaa                                                                                    >  2:4253900/2‑100 (MQ=18)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTaaa                                                                                    >  1:1038411/1‑100 (MQ=33)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTaaa                                                                                    <  2:826408/100‑1 (MQ=32)
gTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTaaa                                                                                    >  1:2046412/1‑100 (MQ=32)
 ttGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAAt                                                                                   >  2:3283050/1‑100 (MQ=33)
  tgtgCTAATCGGTATTAATGATCCGTTATGCTTAACCTTATAACGACGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAAt                                                                                   <  2:100506/96‑1 (MQ=11)
  tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGGGAAGATTTTCAGCCTGATACAGATTAAATc                                                                                  <  1:2320207/100‑1 (MQ=18)
  tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATc                                                                                  <  2:1919781/100‑1 (MQ=33)
  tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATc                                                                                  <  2:2939846/100‑1 (MQ=33)
  tGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATc                                                                                  <  1:3628523/100‑1 (MQ=32)
     gCTAACCGGTACAAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGa                                                                               >  2:2909188/1‑100 (MQ=18)
      cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGaa                                                                              >  1:3547376/1‑100 (MQ=33)
      cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGaa                                                                              >  1:747946/1‑100 (MQ=32)
      cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGaa                                                                              >  2:623429/1‑100 (MQ=33)
       tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAAc                                                                             <  1:55292/100‑1 (MQ=33)
        aaCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACg                                                                            >  2:2625395/1‑100 (MQ=32)
         aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGc                                                                           >  2:3403800/1‑100 (MQ=33)
         aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGc                                                                           <  2:1094370/100‑1 (MQ=33)
          ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCa                                                                          <  2:4123544/100‑1 (MQ=32)
          ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCa                                                                          >  2:2136648/1‑100 (MQ=33)
          ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCa                                                                          >  1:1872820/1‑100 (MQ=33)
           cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCan                                                                         <  2:1502600/100‑2 (MQ=18)
            ggTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGa                                                                        >  2:3480996/1‑100 (MQ=32)
             gTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGaa                                                                       <  2:2943911/100‑1 (MQ=33)
                cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAATCTGTTTTGGCGGATTGAGAGAAGATTGTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCg                                                                    >  1:142697/1‑100 (MQ=12)
                 tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCgg                                                                   >  2:2556098/1‑100 (MQ=33)
                   aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAGTCAGAACGCAGAAGCGGTc                                                                 <  1:131255/100‑1 (MQ=17)
                   aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTc                                                                 >  2:2525712/1‑100 (MQ=33)
                   aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTc                                                                 <  1:4240778/100‑1 (MQ=33)
                    tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCt                                                                >  2:1229679/1‑100 (MQ=33)
                    tGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCt                                                                <  1:80411/100‑1 (MQ=33)
                     gAACCGTTAGGCTTAACCGTACAACGCGGAGGCTGTGTTGGCGGATGGAGAGAGGATGTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTg                                                               <  2:2052423/100‑1 (MQ=11)
                     gAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTg                                                               <  1:1570241/100‑1 (MQ=32)
                      aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGCAGACTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGa                                                              >  1:3602551/1‑100 (MQ=12)
                      aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGa                                                              >  1:3318678/1‑100 (MQ=33)
                      aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGa                                                              <  2:1971042/100‑1 (MQ=32)
                        ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAt                                                             >  1:1733800/1‑99 (MQ=33)
                        ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                            <  2:3454981/100‑1 (MQ=33)
                        ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                            >  1:1568697/1‑100 (MQ=33)
                        ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                            <  1:4018304/100‑1 (MQ=33)
                        ccGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa                                                            <  2:3701420/100‑1 (MQ=33)
                          ttGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaa                                                          <  1:3077825/99‑1 (MQ=18)
                          gTGATGCTTAACCTTACAACGCTGAAGCTTTTTTGGCGTATTGAGAGAAGATTTTCAGTCTGATACAGATTAAATTAGAACGCAGAAGCGGTCTGa                                                              <  1:3392890/96‑1 (MQ=11)
                          gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAGTCAGAACGCAGAAGCGGTCTGATaa                                                           >  2:2573833/1‑99 (MQ=18)
                          gTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaa                                                          >  2:3235346/1‑100 (MQ=32)
                           tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa                                                         >  2:3077843/1‑100 (MQ=33)
                            gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                        <  1:1418667/100‑1 (MQ=33)
                            gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                        <  2:2697576/100‑1 (MQ=32)
                            gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                        <  2:3842766/100‑1 (MQ=33)
                            gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                        <  1:3563280/100‑1 (MQ=32)
                            gAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc                                                        <  2:3283420/100‑1 (MQ=33)
                             atgCTGAACCTTACAACGCGGAAGCTGTTTTGGCGGATTGTGATAAGGTGGTGAGGCTGATAATGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa                                                         <  1:3713218/96‑1 (MQ=11)
                              ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAg                                                      >  1:1073568/1‑100 (MQ=33)
                              ggCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACACAGAAGCGGTCTGATAAAACAg                                                      <  1:1121861/100‑1 (MQ=18)
                               ncTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGACTGATACAGATTAAATCAGAACGCAGGAGCGGTCTGATAAAACAGa                                                     >  1:1542011/2‑100 (MQ=255)
                               gCTTAACCTTACAACGCCTAAGCTGTTTTGTCGGATTGAGAGAAGA‑TTTCATCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTg                                                               <  1:3110990/89‑1 (MQ=11)
                               gCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa                                                     >  1:136296/1‑100 (MQ=33)
                                 ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAt                                                   <  1:1770861/100‑1 (MQ=33)
                                 ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAt                                                   >  1:2654479/1‑100 (MQ=33)
                                  tAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGGAGCGGTCTGATAAAACAGAAtt                                                  <  1:2556085/100‑1 (MQ=18)
                                  tAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAtt                                                  <  2:187105/100‑1 (MQ=32)
                                    aCCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTg                                                <  1:64639/100‑1 (MQ=33)
                                     ccTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGTACGCAGAAGCGGTCTGATAAAACAGAATTTGc                                               >  1:1811662/1‑100 (MQ=18)
                                     ccTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGc                                               <  2:1680865/100‑1 (MQ=33)
                                     ccTTACAACGCCGAAGCTGTTTTGGCGGACCGAGAGAAGACTTTCAGCCTGATACAGATTAAGTCAGCACGCACAAGCGGTCGGATAAAAGAGAAttt                                                 >  1:607982/1‑98 (MQ=11)
                                      cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc                                              <  2:551889/100‑1 (MQ=33)
                                      cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc                                              <  2:2543807/100‑1 (MQ=33)
                                      cTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGc                                               <  1:462313/99‑1 (MQ=32)
                                       ttACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCt                                             <  2:3318697/100‑1 (MQ=33)
                                        tACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTg                                            >  1:1259702/1‑100 (MQ=33)
                                          cAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc                                          >  1:4261476/1‑100 (MQ=33)
                                          aaaCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTAAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc                                              >  1:2178497/2‑96 (MQ=18)
                                           aaCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcg                                         >  2:3467127/1‑100 (MQ=33)
                                            aCGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg                                        >  1:3366357/1‑100 (MQ=33)
                                              gCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGcc                                      >  2:3871870/1‑100 (MQ=35)
                                               ccGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg                                     >  2:4237974/1‑100 (MQ=35)
                                               ccGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg                                     <  1:93191/100‑1 (MQ=35)
                                                  aaGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAg                                  >  2:290049/1‑100 (MQ=35)
                                                   aGCTGTTTTGGCGTATTCAGAGAATATTTTCAGCCTGATACAGATTAAATCATAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTtgcggca                                      <  1:4154887/95‑2 (MQ=11)
                                                   aGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgc                                 <  2:2885314/100‑1 (MQ=35)
                                                     cTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgcgc                               <  2:2147791/100‑1 (MQ=35)
                                                      tGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGcgcg                              >  2:4029942/1‑100 (MQ=33)
                                                       gTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg                             <  2:304504/100‑1 (MQ=33)
                                                          ttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtgg                          >  2:1495059/1‑100 (MQ=33)
                                                          ttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtgg                          <  2:676383/100‑1 (MQ=33)
                                                          ttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtgg                          <  1:521025/100‑1 (MQ=32)
                                                            ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                        <  1:3140498/100‑1 (MQ=33)
                                                            ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc                        <  2:4131826/100‑1 (MQ=33)
                                                              cGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTccc                      <  2:341549/100‑1 (MQ=33)
                                                              cGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTccc                      <  1:3919506/100‑1 (MQ=33)
                                                              cGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTccc                      <  2:1759364/100‑1 (MQ=32)
                                                               ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa                     <  2:778975/100‑1 (MQ=33)
                                                                gATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc                    >  1:4406872/1‑100 (MQ=32)
                                                                 aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                   <  1:3345665/100‑1 (MQ=31)
                                                                 aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                   <  1:3698634/100‑1 (MQ=31)
                                                                 aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                   <  2:4248207/100‑1 (MQ=31)
                                                                 aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                   <  1:4102139/100‑1 (MQ=31)
                                                                 aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc                   <  1:598474/100‑1 (MQ=31)
                                                                               tttaggcTGATACAGATTAAAGCAGGACGCAGAAGCTGGCTGATAAAACAGAGTTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCAGGCCGa     <  1:3970241/94‑1 (MQ=1)
                                                                                  aggcTGAGACAGATCAAATCAGAAGTGAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt  <  1:3008339/97‑1 (MQ=1)
                                                                                                   |                                                                                  
GTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACT  >  NC_000913/228622‑228803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.