New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 349605 =NA (NA)14 (0.100) 7/164 NT NA noncoding (1/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 349637 = NA (NA)noncoding (33/365 nt) REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences

Only 100 of 268 total aligned reads displayed.

AAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT  >  NC_000913/349506‑349704
                                                                                                   |                                                                                                   
ccgtaggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagg                                                                                                     >  1:3293642‑M1/100‑100 (MQ=255)
aaGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATg                                                                                                     <  2:3772334/100‑1 (MQ=255)
  gCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGcc                                                                                                   <  1:3696697/100‑1 (MQ=255)
   taggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCt                                                                                                  >  2:693481‑M1/97‑100 (MQ=255)
   taggcctgataagtcacgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCt                                                                                                  >  1:1503833‑M1/97‑100 (MQ=255)
   cATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCt                                                                                                  <  2:331278/100‑1 (MQ=255)
   cATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCt                                                                                                  >  2:344202/1‑100 (MQ=255)
    aTCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTg                                                                                                 >  1:581430/1‑100 (MQ=255)
    aTCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTg                                                                                                 <  1:3703475/100‑1 (MQ=255)
    aTCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTg                                                                                                 >  2:2034132/1‑100 (MQ=255)
     tCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGa                                                                                                >  1:4120894/1‑100 (MQ=255)
     ggcctgataagtcgcgtcagcggcgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGa                                                                                                >  1:3814735‑M1/95‑100 (MQ=255)
       aaCTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATg                                                                                              >  2:1730990/1‑100 (MQ=255)
       aaCTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATg                                                                                              <  1:1916265/100‑1 (MQ=255)
       aaCTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATg                                                                                              >  2:2113995/1‑100 (MQ=255)
        actactACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGc                                                                                             <  1:460436/100‑1 (MQ=255)
        actactACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGc                                                                                             >  2:2927165/1‑100 (MQ=255)
           actacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTc                                                                                          >  1:4240372/1‑100 (MQ=255)
             tacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGc                                                                                        >  2:477603/1‑100 (MQ=255)
             tacCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGc                                                                                        <  2:801251/100‑1 (MQ=255)
              acCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCt                                                                                       >  2:3463250/1‑100 (MQ=255)
                  gTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAGCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGAcg                                                                                   <  2:4214009/100‑1 (MQ=255)
                  gTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGAcg                                                                                   >  1:51207/1‑100 (MQ=255)
                  gTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGAc                                                                                    <  2:4073233/99‑1 (MQ=255)
                     cGAAGAGAAGCTCGACAACCTGTTTGCTCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                >  1:195313/1‑100 (MQ=255)
                     cGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGa                                                                                >  1:4314620/1‑100 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  1:848979/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  2:3365880/100‑1 (MQ=255)
                      gAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGAc                                                                               <  2:3638187/100‑1 (MQ=255)
                       aaGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACt                                                                              <  1:211668/100‑1 (MQ=255)
                           gaAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATc                                                                          >  1:2505006/1‑100 (MQ=255)
                           gaAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATc                                                                          >  1:1093589/1‑100 (MQ=255)
                            cgcatcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCa                                                                         >  2:749078‑M1/72‑100 (MQ=255)
                            aaGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCa                                                                         <  2:737871/100‑1 (MQ=255)
                              ggtCGACACCCTGTGTGCCCGTAGCCAGGTGCATTAAGAACCGCCCGTTGATTGTATGCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAg                                                                        <  1:1929137/97‑1 (MQ=25)
                              gCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCCgg                                                                       >  2:110115/1‑100 (MQ=255)
                              catcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAgg                                                                       >  2:3040841‑M1/70‑100 (MQ=255)
                               cTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      >  1:3413874/1‑100 (MQ=255)
                               atcaggcatcggttgtcggatgcgacgccatccgtcttatccgacctacagttcagtgcacctcgtagGCCTGATGCGTCGCTGACGCGACTTATCAGGc                                                                      >  2:446416‑M1/69‑100 (MQ=255)
                                 cGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCt                                                                    <  1:676274/100‑1 (MQ=255)
                                 cGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCt                                                                    >  1:204944/1‑100 (MQ=255)
                                   aCAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTAc                                                                  >  1:933793/1‑100 (MQ=255)
                                    cAACCTGTTTGCCCGTAGCCAGGTGAAATAAGAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACg                                                                 >  1:710187/1‑100 (MQ=255)
                                    cAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACg                                                                 >  1:1729181/1‑100 (MQ=255)
                                       ccTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAgg                                                              >  1:1713252/1‑100 (MQ=255)
                                        cTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGt                                                             >  1:1431757/1‑100 (MQ=255)
                                          gtatGCACGTAGCCAGGAGAAAAAAAAAACGCCCGTAGCTAGTATACGACAGCCTATGCCTGATGCGTCGCTAACGCAACTCATCAGACCTACggggcg                                                            >  1:3063431/4‑97 (MQ=255)
                                            ttGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCAc                                                         <  2:3760130/100‑1 (MQ=255)
                                            ttGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCAc                                                         >  1:3370365/1‑100 (MQ=255)
                                             tGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACt                                                        >  2:4332778/1‑100 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       <  1:4332746/100‑1 (MQ=255)
                                              gCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTg                                                       <  2:2774773/100‑1 (MQ=255)
                                                ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGaa                                                     >  2:308177/1‑100 (MQ=255)
                                                ccGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGaa                                                     >  1:3318989/1‑100 (MQ=255)
                                                 cGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAAc                                                    <  2:3855902/100‑1 (MQ=255)
                                                  gTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACt                                                   >  2:2199204/1‑100 (MQ=255)
                                                       cAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGG                                              <  1:419891‑M1/100‑1 (MQ=255)
                                                        aGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGT                                             <  1:3259927‑M1/100‑1 (MQ=255)
                                                         ggTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTC                                            >  2:4374226‑M1/1‑100 (MQ=255)
                                                         ggTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCCACCAGGCGCACTGAACTGTAGGTC                                            >  1:2922874‑M1/1‑100 (MQ=255)
                                                          gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCG                                           <  2:2513283‑M1/100‑1 (MQ=255)
                                                          gTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCG                                           <  2:2721348‑M1/100‑1 (MQ=255)
                                                          gTGAAATAAAAAACGCCCGTTGATGGTATTCGACAGCCGATACCTGATGCGTCGCTGACGCGACTAATCAACCCTACGAGGTGCACCGAACTGTacg                                              >  1:2172806/1‑95 (MQ=255)
                                                            gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGA                                         >  1:34674‑M1/1‑100 (MQ=255)
                                                            gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGA                                         >  2:2708982‑M1/1‑100 (MQ=255)
                                                            gAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGG                                          <  1:3897956‑M1/99‑1 (MQ=255)
                                                              aaTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGGGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATa                                       <  2:2447100/100‑1 (MQ=255)
                                                              aaTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATa                                       <  2:1798270/100‑1 (MQ=255)
                                                              aaTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATa                                       <  1:3554606/100‑1 (MQ=255)
                                                              aaTAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATa                                       <  1:2793314/100‑1 (MQ=255)
                                                                 aaaaaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGa                                    <  1:4363745/100‑1 (MQ=255)
                                                                    aaaCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACgg                                 >  2:870149/1‑100 (MQ=255)
                                                                      aCGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGAt                               <  2:231583/100‑1 (MQ=255)
                                                                       cGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATg                              >  2:2475750/1‑100 (MQ=255)
                                                                         cccGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGc                            >  2:1536869/1‑100 (MQ=255)
                                                                         cccGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGATCGGATAAGACAGATgg                             >  1:1022720/1‑99 (MQ=255)
                                                                           cGTTGATTGTATTAGACAGCCGATGCCTGATGCGTCGCAGACGCGACTTATCATGCCTACGAGGTGCACTGAACTGTAGGCCGGATAAGACGGATGGCg                           >  1:2728674/1‑99 (MQ=18)
                                                                                aTTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCAt                     <  1:4079325/100‑1 (MQ=255)
                                                                                  tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatcc                   <  2:2181930‑M1/100‑22 (MQ=255)
                                                                                  tGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGAACTGAACTGGAGGTGCGATGAGTCGGGAAGCGGCGCATcc                   >  1:2324992/1‑100 (MQ=14)
                                                                                   gTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGGCGGATGGGGGCGCATCCg                  >  1:400301/1‑100 (MQ=255)
                                                                                   gTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGGTGGCGTCGCATCCg                  >  2:2608744/1‑100 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGGACTGTAGGACGGCTCAGATGGATTGCGGCGCCTCCGAc                >  2:2360768/1‑100 (MQ=17)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGAc                >  2:1339184/1‑100 (MQ=255)
                                                                                     aTTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGAc                <  1:2271042/100‑1 (MQ=255)
                                                                                      ttCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGAACTGAACTGTAGGTCGGATAAGACGCATAGCGTCGCATCCGACa               >  1:1287782/1‑100 (MQ=255)
                                                                                       tCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATgcgacgccatccgtcttatccgacct              <  1:3207509‑M1/100‑27 (MQ=255)
                                                                                        cGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAAc             >  2:962764/1‑100 (MQ=255)
                                                                                        cGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAAc             >  2:4053715/1‑100 (MQ=255)
                                                                                        cGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAAc             >  2:2236887/1‑100 (MQ=255)
                                                                                         gACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAAcc            >  2:1458067/1‑100 (MQ=255)
                                                                                           cAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGa          <  2:705371/100‑1 (MQ=255)
                                                                                           cAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGa          >  1:1551108/1‑100 (MQ=255)
                                                                                            aGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGAt         <  2:3560243/100‑1 (MQ=255)
                                                                                             gCCGATGCCTGATGTGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATg        >  2:629380/1‑100 (MQ=255)
                                                                                               cGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGcc      <  2:494218/100‑1 (MQ=255)
                                                                                               cGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGcc      <  1:2708967/100‑1 (MQ=255)
                                                                                                gATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGc       >  1:818081/1‑98 (MQ=255)
                                                                                                gATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCt     <  1:1802595/100‑1 (MQ=255)
                                                                                                 aTGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTg    <  2:315914/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AAGCATCAACTACTACCAGTACGAAGAGAAGCTCGACAACCTGTTTGCCCGTAGCCAGGTGAAATAAAAAACGCCCGTTGATTGTATTCGACAGCCGATGCCTGATGCGTCGCTGACGCGACTTATCAGGCCTACGAGGTGCACTGAACTGTAGGTCGGATAAGACGGATGGCGTCGCATCCGACAACCGATGCCTGAT  >  NC_000913/349506‑349704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.