New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 832307 =NA (NA)4 (0.030) 3/164 NT NA noncoding (19/98 nt) RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3877676 NA (NA)noncoding (91/98 nt) RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP280 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 204 total aligned reads displayed.

GTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGT  >  NC_000913/832208‑832406
                                                                                                    |                                                                                                    
gTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                      <  2:2067157/100‑1 (MQ=255)
  ccGCGTAAGCCGGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCATGCTGATGAACAAACGCAAATCTGCCTGATGCGCTACGCTTATc                                                                                                    <  1:459641/100‑1 (MQ=38)
  ccGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATc                                                                                                    <  2:2621733/100‑1 (MQ=255)
   cgcgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCa                                                                                                   <  2:4001116/100‑1 (MQ=255)
    gcgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg                                                                                                  <  2:871971/100‑1 (MQ=255)
    gcgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg                                                                                                  >  2:1769933/1‑100 (MQ=255)
    gcgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg                                                                                                  <  1:600233/100‑1 (MQ=255)
    gcgTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg                                                                                                  <  1:2148889/100‑1 (MQ=255)
      gTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGc                                                                                                <  1:3863310/100‑1 (MQ=255)
       tAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGcc                                                                                               <  1:2257975/100‑1 (MQ=255)
           ccTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCATACg                                                                                           >  1:3958304/1‑100 (MQ=255)
              gCCGCTGCGCAGTAATCTTTTCTGCCGGGCTTT‑GCGCTGCATCAGTCTGATCTTTAACAGGACATCTGCATGATGGGCTACGCTTATCATGCCTACg                                                                                           >  1:1576799/1‑97 (MQ=255)
               ccGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGaa                                                                                       <  1:1162150/100‑1 (MQ=255)
               ccGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGaa                                                                                       >  2:3263/1‑100 (MQ=255)
                cGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCGCGGCATCAGGCTGATGAACTAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAc                                                                                      <  1:3175772/100‑1 (MQ=255)
                cGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAc                                                                                      <  1:2667848/100‑1 (MQ=255)
                 gCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                     <  2:2420338/100‑1 (MQ=255)
                 gCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                     >  2:1878166/1‑100 (MQ=255)
                 gCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                     >  2:3750066/1‑100 (MQ=255)
                 gCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                     >  2:4270028/1‑100 (MQ=255)
                 gCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                     <  2:4405115/100‑1 (MQ=255)
                    gcgcAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTg                                                                                 <  2:2646828/100‑1 (MQ=255)
                     cgcAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGc                                                                                <  1:4200096/100‑1 (MQ=255)
                     cgcAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGc                                                                                <  1:365729/100‑1 (MQ=255)
                       cAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCaa                                                                              <  1:1352074/100‑1 (MQ=255)
                        aGTACTCTTTTATGCCGGGCTAT‑GCCAGGCAGCAGGCTGATGAACAATCGCACAACTGGCTGGTGCGCTATGCTTATCAGGCTTACGTGAACT‑CTGc                                                                                <  1:1274238/97‑1 (MQ=255)
                        aGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAat                                                                             >  2:1438544/1‑100 (MQ=255)
                         gTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAata                                                                            >  2:3419341/1‑100 (MQ=255)
                          tAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGAAGAAAAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAatat                                                                           <  1:542160/100‑1 (MQ=255)
                             tCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATAtt                                                                        <  1:813516/100‑1 (MQ=255)
                              cTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAACCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATACTg                                                                       <  1:3090736/100‑1 (MQ=255)
                              cTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTg                                                                       >  1:1484792/1‑100 (MQ=255)
                              cTTTTATGCCAGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGGGAACT‑CTGCAATATAtt                                                                        >  1:3074009/1‑99 (MQ=255)
                                ctgaTGCCGGGC‑ATAGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGaa                                                                     >  2:1819760/4‑100 (MQ=25)
                                   aTGCCGGGCTAT‑TCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTTAAtt                                                                   >  1:3984027/1‑99 (MQ=255)
                                     gCCGGGCTAT‑GCCCGACATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGc                                                                >  2:4298118/1‑100 (MQ=255)
                                      ttccgatct‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCa                                                               <  1:1777584/92‑1 (MQ=255)
                                      ccGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCa                                                               <  2:2275882/100‑1 (MQ=255)
                                      ccGGGCTAT‑GCCCGGCAGCAGGCTGAGGAACAAACGCAAAACTGCCTGATGTGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGc                                                                <  1:3904388/99‑1 (MQ=255)
                                       cGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCAt                                                              <  2:529131/100‑1 (MQ=255)
                                           cTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCtt                                                          >  1:2764350/1‑100 (MQ=255)
                                            tAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCttt                                                         <  2:3040993/100‑1 (MQ=255)
                                             atctcccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCttt                                                         <  1:454050/96‑1 (MQ=255)
                                                gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTg                                                       <  1:4042937/99‑1 (MQ=255)
                                                gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGt                                                      >  1:3601328/1‑100 (MQ=255)
                                                gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGt                                                      <  2:1005748/100‑1 (MQ=255)
                                                 cccGGTATCAGGCTGATGAACAAACGCAAAACTTCCTTATGCACTAGGCTTATCAGGCCTACGTTAACT‑CTTCAATATATTGAATTTGCATGCttt                                                         <  1:1516480/96‑1 (MQ=21)
                                                 cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCtttagat                                                     >  2:454051/1‑96 (MQ=255)
                                                 cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTa                                                     >  2:101461/1‑100 (MQ=255)
                                                 cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTa                                                     <  2:656296/100‑1 (MQ=255)
                                                  ccGGCATCAGGCTGATGAACAAACGGAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGt                                                      <  1:4103288/98‑1 (MQ=255)
                                                  ccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAg                                                    >  2:183447/1‑100 (MQ=255)
                                                   cGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAgg                                                   <  2:633076/100‑1 (MQ=255)
                                                    ggCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGc                                                  <  2:3236209/100‑1 (MQ=255)
                                                       aTCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCgg                                               <  2:2827913/100‑1 (MQ=255)
                                                       aTCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGCAGGCCgg                                               <  2:2314512/100‑1 (MQ=255)
                                                       aTCAGGCTGACGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGTAACATATTGAATTTGCATGCTTTTGTAGGCCgg                                               <  1:2894645/100‑1 (MQ=255)
                                                        tCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGa                                              <  1:4004542/100‑1 (MQ=255)
                                                          aGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAgatcggaag                                            >  2:597183/1‑92 (MQ=255)
                                                          aGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATa                                            >  1:740520/1‑100 (MQ=255)
                                                           ggCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGTCCGGATaa                                           >  1:3779103/1‑100 (MQ=255)
                                                              tgatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTCAACT‑CTGCAATATATTGACTTTGCATGCTTTTGTAGGCCGGATAAg                                          >  1:1078977/1‑98 (MQ=255)
                                                               gatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCg                                       <  1:2556379/100‑1 (MQ=255)
                                                               gatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCg                                       >  2:2497618/1‑100 (MQ=255)
                                                                 tgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGtt                                     <  1:2458555/100‑1 (MQ=255)
                                                                  gaACAAACGCAAAACTGCCTTATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGtt                                     >  2:4387265/1‑99 (MQ=255)
                                                                  gaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGttt                                    <  1:2068079/100‑1 (MQ=255)
                                                                    aCAATCGCAAAACTGCCTGATGCGCTACGCTTATGAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGttt                                    <  1:4346413/98‑1 (MQ=255)
                                                                     cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcg                                 >  2:1692882/1‑100 (MQ=255)
                                                                     cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcg                                 <  1:3505734/100‑1 (MQ=255)
                                                                     cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcg                                 >  2:3661704/1‑100 (MQ=255)
                                                                       agttcacgtaggcctgataagcgtagcgcATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                               <  2:119137‑M1/71‑1 (MQ=255)
                                                                       aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                               <  1:1878116/100‑1 (MQ=255)
                                                                       aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                               <  1:3260806/100‑1 (MQ=255)
                                                                         cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgccgc                             >  2:3120720/1‑100 (MQ=255)
                                                                         cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgccgc                             <  2:3129669/100‑1 (MQ=255)
                                                                         cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgccgc                             >  1:628282/1‑100 (MQ=255)
                                                                         cGCAAAACTGCCTGATGCGCTACGCTTATCAGGACTACGTGAACT‑CTGCAATATATCGAATTTGCATGCTTTTGTAGGCCGGATAAGGCTTTTAcgcc                               >  1:2961745/1‑98 (MQ=255)
                                                                          gCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCa                            <  2:3873626/100‑1 (MQ=255)
                                                                          gCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATCGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCa                            <  1:4269996/100‑1 (MQ=255)
                                                                           cAACACTGCCTTATATGCTACGCTTCTCAGGCCTACGTGAACT‑CTGCAATATTTTGAATTTGCATGCTTTTGTAGGCCTGATAAGGCGTTTAcgtc                               <  1:3290984/96‑3 (MQ=17)
                                                                             aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATGCGGCGTAAAcgccttatcc                         <  2:3998416/100‑7 (MQ=17)
                                                                             aaaCGGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                         <  1:1219647/100‑1 (MQ=255)
                                                                               attGCCTGATGCGCTACGCTTATCAGGCCTACATGATTT‑CTGCAATATATTGAATTTGGAAGAATTTGTAGGCCAGATGCGGCGTAAACGCCTTATCCgg                       <  1:1994298/98‑1 (MQ=18)
                                                                               aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                       <  2:3183422/100‑1 (MQ=255)
                                                                                cTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                      <  2:1977242/100‑1 (MQ=255)
                                                                                cTGCCTGATGCGCTACGCTTATCAGGCCTACG‑CAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                      <  2:1276616/100‑1 (MQ=17)
                                                                                cTGCCTGATGCGCTACGCTTATCAGGCCTACG‑CAGCTCCTGCAATATATTGAATTTTCATGCTTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                      <  2:4076572/100‑1 (MQ=17)
                                                                                 ggcctgataagcgtagcgcATCAGGCCTAGATGATCT‑CTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                     <  2:150999‑M1/81‑1 (MQ=255)
                                                                                  gCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                    <  1:3148440/100‑1 (MQ=255)
                                                                                   cctgataagcgtagcgcATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAtt                   <  2:1922188‑M1/83‑1 (MQ=255)
                                                                                   ccTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAtt                   <  2:2759645/100‑1 (MQ=255)
                                                                                       aTGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcac               <  2:3490034/100‑1 (MQ=255)
                                                                                       aTGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACACCGCATCCGGCATTTcac               <  1:930020/100‑1 (MQ=255)
                                                                                          cgcTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCNTGCTNTTNTAGGCCGGNTAAGGCGTTTACGCCGCATCCGGCATTTCacaan            <  2:2151964/100‑2 (MQ=255)
                                                                                          cgcTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcacatc            >  1:370932/1‑98 (MQ=255)
                                                                                          cgcTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaac            >  2:2124390/1‑100 (MQ=255)
                                                                                             tACGCTTATCAGGCCTCCGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAg         <  2:3557852/100‑1 (MQ=255)
                                                                                              aCGCTTATCAGGCCTACGTTAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGc        <  1:183447/100‑1 (MQ=255)
                                                                                               cGCTTATCAGGCCAACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCa       >  2:2964579/1‑100 (MQ=255)
                                                                                                    |                                                                                                    
GTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACT‑CTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGT  >  NC_000913/832208‑832406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.