New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 937227NA (NA)11 (0.080) 5/162 NT NA noncoding (4/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 937259 NA (NA)noncoding (36/36 nt) REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 182 total aligned reads displayed.

TCGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAG  >  NC_000913/937128‑937326
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tCGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTAT                                                                                                     >  2:510393‑M1/1‑100 (MQ=255)
tCGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTAT                                                                                                     >  2:191275‑M1/1‑100 (MQ=255)
 cGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATg                                                                                                    >  1:2486233‑M1/1‑99 (MQ=255)
 cGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATg                                                                                                    >  2:1518096‑M1/1‑99 (MQ=255)
 cGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATg                                                                                                    >  2:2054687‑M1/1‑99 (MQ=255)
  gAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCACCACCGCCGTTTGACTAACTAATGCATCGTATgc                                                                                                   >  1:2325407‑M1/1‑98 (MQ=255)
     cAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccgg                                                                                                <  1:1135976‑M1/100‑6 (MQ=255)
       gATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggat                                                                                              >  1:1281596‑M1/1‑93 (MQ=255)
         tGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATaa                                                                                            >  1:1208806/1‑100 (MQ=255)
         tGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATaa                                                                                            >  1:2537112/1‑100 (MQ=255)
          ggAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAg                                                                                           <  1:3837013/100‑1 (MQ=255)
           gAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAgg                                                                                          <  2:2203694/100‑1 (MQ=255)
              gcgcAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGgcgc                                                                                       <  2:3580006/100‑1 (MQ=255)
                gcAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCgg                                                                                     >  2:1818238/1‑100 (MQ=255)
                gcAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCgg                                                                                     >  1:3445606/1‑100 (MQ=255)
                 cAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGt                                                                                    <  2:4288415/100‑1 (MQ=255)
                  aGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGt                                                                                    <  1:2856354/99‑1 (MQ=255)
                  aGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTa                                                                                   >  2:3627782/1‑100 (MQ=255)
                      gATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGt                                                                               >  2:862875/1‑100 (MQ=255)
                        ttGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCg                                                                             <  1:1798852/100‑1 (MQ=255)
                        ttGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCg                                                                             <  2:2576651/100‑1 (MQ=255)
                        ttGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGGGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCg                                                                             <  2:3091449/100‑1 (MQ=255)
                         tGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGc                                                                            >  2:2709475/1‑100 (MQ=255)
                           tCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGCTCAGGCGCGGTCGCGTCGCAT                                                                          <  1:2692178‑M2/100‑1 (MQ=255)
                           tCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCAT                                                                          <  2:3527232‑M2/100‑1 (MQ=255)
                            cAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTaagatcggaag                                                                         >  2:2793039/1‑90 (MQ=255)
                            cAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATC                                                                         <  1:41916‑M2/100‑1 (MQ=255)
                            cAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATC                                                                         <  1:159199‑M2/100‑1 (MQ=255)
                            cAGCGAACAGGCGCACAACGGTAATCGTGAAGCGCCGGCCCCAACGCCGTTTGACTAACTAATGCATCGTATGCCAGATAAGGCGCGGTAGCCTCg                                                                             <  1:3273045/96‑1 (MQ=255)
                             aGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggatgcgacgctaccgcgccttatcc                                                                        <  1:4091813‑M1/100‑30 (MQ=255)
                             aGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCC                                                                        <  2:4133304‑M2/100‑1 (MQ=255)
                              gCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCG                                                                       <  2:3550554‑M2/100‑1 (MQ=255)
                               cGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggatgcgacgctaccgcgccttatccgg                                                                      <  2:445840‑M1/100‑32 (MQ=255)
                               cGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGG                                                                      <  1:1842835‑M2/100‑1 (MQ=255)
                                gagcaggGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggatgcgacgctaccgcgccttatccggc                                                                     <  2:1456479‑M1/97‑33 (MQ=255)
                                gAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggatgcgacgctaccgcgccttatccggc                                                                     <  1:298074‑M1/100‑33 (MQ=255)
                                gAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATgccggatgcgacgctaccgcgccttatccggc                                                                     <  1:1653639‑M1/100‑33 (MQ=255)
                                gAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGC                                                                     >  2:2265198‑M2/1‑100 (MQ=255)
                                gAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGC                                                                     >  2:4235351‑M2/1‑100 (MQ=255)
                                 aaCAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCa                                                                    <  1:1654768‑M2/100‑2 (MQ=255)
                                  aCAGGGTCACAACGGTAATCGTGGAGGGCGGGCCCCACCGCCGTTTGACTACCTAATGCATCGTATgccggatgcgacgctaccgcgccttatccggcat                                                                   <  1:1261283‑M1/100‑35 (MQ=255)
                                   cAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCAct                                                                  >  1:52914/1‑100 (MQ=255)
                                     ggggCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCActct                                                                <  2:3499051/100‑1 (MQ=255)
                                     ggggCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCActct                                                                >  1:3479013/1‑100 (MQ=255)
                                      gggCACAACTGTAACCGTGAAGTGCTGGGCCCACCGCCTCTTGACTAAATAATGCATCGTATgccagatgcgacgctaccgcgccttatccggcat                                                                   <  1:4078650‑M1/96‑35 (MQ=255)
                                        gCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATc                                                             <  1:1075350/100‑1 (MQ=255)
                                        gCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATc                                                             <  2:1281600/100‑1 (MQ=255)
                                        gCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATc                                                             <  1:2067162/100‑1 (MQ=255)
                                         cacaACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCa                                                            <  1:2552010/100‑1 (MQ=255)
                                         cacaACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCa                                                            <  1:3205905/100‑1 (MQ=255)
                                         cacaACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCa                                                            <  1:1155302/100‑1 (MQ=255)
                                           caACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAAc                                                          <  1:2116174/100‑1 (MQ=255)
                                            aaCGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACt                                                         <  1:3403735/100‑1 (MQ=255)
                                            aaCGGTAATCGTCAAGAGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACt                                                         <  1:3403395/100‑1 (MQ=255)
                                             aCGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTg                                                        <  2:3378404/100‑1 (MQ=255)
                                             aCGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTg                                                        <  2:538440/100‑1 (MQ=255)
                                              cGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGa                                                       >  1:1419668/1‑100 (MQ=255)
                                                   aTCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAAtt                                                  <  1:376901/100‑1 (MQ=255)
                                                    tCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTc                                                 <  1:1760199/100‑1 (MQ=255)
                                                     cGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCa                                                <  2:2416647/100‑1 (MQ=255)
                                                      gTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAg                                               <  1:299865/100‑1 (MQ=255)
                                                      gTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAg                                               <  2:2741842/100‑1 (MQ=255)
                                                       tGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGt                                              <  1:719671/100‑1 (MQ=255)
                                                            tGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCTGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTAtttt                                         <  2:572545/100‑1 (MQ=255)
                                                             gCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttc                                        <  1:2426279/100‑1 (MQ=255)
                                                             gCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttc                                        >  2:693459/1‑100 (MQ=255)
                                                              cTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTttct                                       <  2:812338/100‑1 (MQ=255)
                                                                ggCCCCCCCGCCATTTCACTAACTAGTGCATCGTATGCCGGATAAGGCTCGGTAGCATCGCATCCGGCCCTCTATCAACTGAACATTCCGTAATttc                                        >  1:1298948/1‑97 (MQ=255)
                                                                 gCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTtcttct                                    >  1:847544/1‑100 (MQ=255)
                                                                 gCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATACTGAATTttcagtt                                    <  2:704555/100‑5 (MQ=255)
                                                                      aCCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCt                               >  1:850560/1‑100 (MQ=255)
                                                                        cgccgTTTGACTATCTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCa                             <  2:65103/100‑1 (MQ=255)
                                                                        cgccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCa                             <  2:591175/100‑1 (MQ=255)
                                                                         gccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCaa                            >  1:1717961/1‑100 (MQ=255)
                                                                         gccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCaa                            <  2:4167155/100‑1 (MQ=255)
                                                                         gccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCaa                            >  2:3904379/1‑100 (MQ=255)
                                                                          ccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAg                           <  1:80291/100‑1 (MQ=255)
                                                                           tgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAAAGCAGTATTTTCTTCTTTCCTCAAGc                          >  1:1539652/2‑100 (MQ=255)
                                                                              ttGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGa                       >  1:3776402/1‑100 (MQ=255)
                                                                                gACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGatt                     >  1:4358106/1‑100 (MQ=255)
                                                                                   taacgaaTGCTTCGTATGCCGGATAAGTCGCGCTATCGTTGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGattatt                  <  1:3123703/100‑1 (MQ=255)
                                                                                     ttccgatcttCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAg                <  2:1419636/91‑1 (MQ=255)
                                                                                     actaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAg                <  2:2903861/100‑1 (MQ=255)
                                                                                     actaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAg                <  2:2794065/100‑1 (MQ=255)
                                                                                     actaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAg                <  1:3627051/100‑1 (MQ=255)
                                                                                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGc               >  2:16195/1‑100 (MQ=255)
                                                                                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGc               <  2:658085/100‑1 (MQ=255)
                                                                                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGc               >  1:380908/1‑100 (MQ=255)
                                                                                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGc               >  2:2832999/1‑100 (MQ=255)
                                                                                       taaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGcc              <  2:1208810/100‑1 (MQ=255)
                                                                                        aaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCt             >  2:408395/1‑100 (MQ=255)
                                                                                         aTGCATCGTATGCCGGATAAGGCGCGGTAGCGTGGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTg            <  2:4998/100‑1 (MQ=255)
                                                                                         aTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTg            <  2:2069811/100‑1 (MQ=255)
                                                                                          tGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTgg           <  1:862872/100‑1 (MQ=255)
                                                                                           gCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGa          >  2:623663/1‑100 (MQ=255)
                                                                                           gCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCGTCTTTCCTCAAGCTGATTATTAGCCTgg           <  1:2068995/99‑1 (MQ=255)
                                                                                             aTCGTATGCCGTATAAGGCGCGGTAGCGTCGCATCCAGCACTCAATCAACTGAAAAGTCAGTATTTTCTTCTTTCCTCAAGCTGATTATCAGCCTGGAAt        >  1:2909902/1‑100 (MQ=255)
                                                                                                  aTGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagaga   >  2:3158203/1‑100 (MQ=255)
                                                                                                   tGCCGGATACGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGACTagaggg  >  1:3083431/1‑98 (MQ=255)
                                                                                                   tGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagagag  >  2:1712498/1‑100 (MQ=255)
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TCGAACAGATGGAAGCGCAGGGGATTGTCAGCGAACAGGGGCACAACGGTAATCGTGAAGTGCTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAG  >  NC_000913/937128‑937326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.