New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3217434 =NA (NA)12 (0.080) 8/164 NT NA noncoding (1/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3217467 = NA (NA)noncoding (34/89 nt) REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 262 total aligned reads displayed.

ACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTA  >  NC_000913/3217368‑3217566
                                                                                                   |                                                                                                   
ggagcacaatgcctgatgcgatgctggcgcatcttatcaggcctgcggggtgtgtagcgggtgtagGCCGGATGCGACGCTTGACGCGCCTTATCCGGcc                                                                                                     >  1:172860‑M1/67‑100 (MQ=255)
aCCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGcc                                                                                                     <  2:2255663/100‑1 (MQ=255)
 ccGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCt                                                                                                    <  1:3551680/100‑1 (MQ=255)
    cgccgcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTaca                                                                                                 >  1:3299813/1‑100 (MQ=255)
       cgcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACAccc                                                                                              <  2:455474/100‑1 (MQ=255)
        gcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCg                                                                                             <  2:1515506/100‑1 (MQ=255)
          ttttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCt                                                                                           <  2:3945415/100‑1 (MQ=255)
          ttttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCt                                                                                           <  1:1163571/100‑1 (MQ=255)
          ttttGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCt                                                                                           >  1:3216743/1‑100 (MQ=255)
           tttGCTATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCTCGGTGCCATTGCCGGATGCGACGCTTGACGCGCCTTATCCCGCCTACAcc                                                                                               <  1:1044111/95‑1 (MQ=21)
            ttGATATTACGCATCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTac                                                                                         <  1:1595003/100‑1 (MQ=255)
             tGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTaca                                                                                        >  1:4144816/1‑100 (MQ=255)
                   tACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACAcccc                                                                                  <  1:955511/100‑1 (MQ=255)
                   tACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACAcccc                                                                                  <  1:730934/100‑1 (MQ=255)
                      gCAACGGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCa                                                                               <  1:4340197/100‑1 (MQ=255)
                       cAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAg                                                                              >  2:528015/1‑100 (MQ=255)
                        aaCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAgg                                                                             <  1:1792166/100‑1 (MQ=255)
                        aaCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAgg                                                                             <  2:3198296/100‑1 (MQ=255)
                        aaCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAgg                                                                             <  2:2060305/100‑1 (MQ=255)
                         aCTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGc                                                                            <  1:153253/100‑1 (MQ=255)
                          cTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGcc                                                                           <  1:1697786/100‑1 (MQ=255)
                            ttatgagtCGCCTCGTCGGCGATTGGTGCGGTGCAATTGCCGGATGCGACTCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                                                         <  2:2568679/93‑1 (MQ=25)
                            ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                                                         >  2:1671654/1‑100 (MQ=255)
                            ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                                                         <  2:1118881/100‑1 (MQ=255)
                            ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                                                         >  1:342952/1‑100 (MQ=255)
                            ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                                                         >  1:1563560/1‑100 (MQ=255)
                            ggATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTg                                                                         >  1:1405756/1‑100 (MQ=255)
                             gATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGa                                                                        <  2:2430485/100‑1 (MQ=255)
                              aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAt                                                                       <  1:840657/100‑1 (MQ=255)
                              aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAt                                                                       <  1:2214496/100‑1 (MQ=255)
                              aTTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGAt                                                                       >  2:4379443/1‑100 (MQ=255)
                               ttAATCGCCGCATCCGCCAGTGGCGCGTTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                                                      <  1:2563912/100‑1 (MQ=255)
                               ttAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                                                      >  1:280630/1‑100 (MQ=255)
                               ttAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                                                      <  1:793625/100‑1 (MQ=255)
                               ttAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                                                      <  1:2939568/100‑1 (MQ=255)
                               ttAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATa                                                                      <  1:3396075/100‑1 (MQ=255)
                                tAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATaa                                                                     <  2:1255767/100‑1 (MQ=255)
                                 aaTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAg                                                                    <  2:4181256/100‑1 (MQ=255)
                                 aaTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGAAGCGACGCTTGACGCGCCTTATTCGGCCTACACCCGCTACACACCCCGCGGGCCTGATAAg                                                                    >  2:3701024/1‑100 (MQ=255)
                                  aTCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCCCTACACACCCCGCAGGCCTGATAAGa                                                                   <  2:2689539/100‑1 (MQ=255)
                                    cgccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGAAGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATg                                                                 >  1:504987/1‑100 (MQ=255)
                                     gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgc                                                                <  2:4075487/100‑1 (MQ=255)
                                     gccgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgc                                                                >  1:2071491/1‑100 (MQ=255)
                                     gccgcATCCGCCAGTGGCGCGGTGCAACTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgc                                                                >  1:1863871/1‑100 (MQ=255)
                                       cgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATgcgc                                                              <  2:378026/100‑1 (MQ=255)
                                       cgcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCACTACACACCCCGCAGGCCTGATAAGATgcgc                                                              >  1:2119088/1‑100 (MQ=255)
                                        gcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGcc                                                             <  2:3416704/100‑1 (MQ=255)
                                        gcATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCCTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGcc                                                             <  2:294845/100‑1 (MQ=255)
                                         cATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCa                                                            <  2:3449298/100‑1 (MQ=255)
                                          ctgcggggtgtgtagcgggtgtaggccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAg                                                           >  1:3460555‑M2/58‑100 (MQ=255)
                                            ccGCCAGTGGCGCGGTGCAATTGCCGGATGTGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgca                                                         >  1:2416377/1‑100 (MQ=255)
                                            ccGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgca                                                         <  2:119148/100‑1 (MQ=255)
                                            ccGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgca                                                         <  1:3959884/100‑1 (MQ=255)
                                             cGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcat                                                        >  2:2860842/1‑100 (MQ=255)
                                             cGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAgcat                                                        >  2:2403231/1‑100 (MQ=255)
                                                    ggCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCa                                                 >  2:2363064/1‑100 (MQ=255)
                                                     gcgcGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAg                                                >  2:2186299/1‑100 (MQ=255)
                                                     gcgcGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAg                                                <  2:1801493/100‑1 (MQ=255)
                                                         ggTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCa                                             >  2:1435927/1‑99 (MQ=255)
                                                          gTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCAtt                                           <  2:1580426/100‑1 (MQ=255)
                                                           tGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATtg                                          >  1:1008373/1‑100 (MQ=255)
                                                            gCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATtgt                                         >  1:928145/1‑100 (MQ=255)
                                                             cAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATtgtg                                        <  2:323532/100‑1 (MQ=255)
                                                              aaTTGCCGGATGCGCCGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATtg                                          <  2:4038321/97‑1 (MQ=255)
                                                               aTTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCt                                      <  1:2938744/100‑1 (MQ=255)
                                                                ttGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTc                                     <  2:1715007/100‑1 (MQ=255)
                                                                 tGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                    <  1:640140/100‑1 (MQ=255)
                                                                  gccggataaggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                   >  1:3569371‑M2/34‑100 (MQ=255)
                                                                  GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTcc                                    >  1:2881174‑M1/1‑99 (MQ=255)
                                                                  GCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCa                                   <  2:3474934‑M1/100‑1 (MQ=255)
                                                                    CGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAc                                 <  2:933975‑M1/100‑1 (MQ=255)
                                                                       ATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgc                              >  2:836377‑M1/1‑100 (MQ=255)
                                                                        TGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgcc                             >  2:1961454‑M1/1‑100 (MQ=255)
                                                                        TGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCACCAACGCTGCAGGCACTGTGCGCCAAccgcc                             <  1:3903997‑M1/100‑1 (MQ=255)
                                                                          cGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgccg                            >  1:233270/1‑99 (MQ=255)
                                                                          cGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCgg                           >  1:4034619/1‑100 (MQ=255)
                                                                          cGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCgg                           >  1:139275/1‑100 (MQ=255)
                                                                          aggcgcgtcaagcgtcgcatccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAAccgccg                            >  2:1549628‑M2/26‑99 (MQ=255)
                                                                           gACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCgg                           >  2:2892610/1‑99 (MQ=255)
                                                                            ncGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGAt                         >  2:2648286/2‑100 (MQ=255)
                                                                            aCGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGAt                         <  2:56181/100‑1 (MQ=255)
                                                                                ttGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCgg                     <  1:1108886/100‑1 (MQ=255)
                                                                                 tGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCTCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                    <  2:4134059/100‑1 (MQ=255)
                                                                                  gACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGc                    <  1:2657961/99‑1 (MQ=255)
                                                                                  gACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCa                   <  2:3572623/100‑1 (MQ=255)
                                                                                    cgcgCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATa                 >  2:1910055/1‑100 (MQ=255)
                                                                                      cgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAcc               <  2:2101169/100‑1 (MQ=255)
                                                                                      cgcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATAc                >  1:2274881/1‑99 (MQ=255)
                                                                                       gcCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCg              <  2:698206/100‑1 (MQ=255)
                                                                                        ccTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGa             >  1:3595716/1‑100 (MQ=255)
                                                                                        ccTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCAGCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGa             >  1:1973390/1‑100 (MQ=255)
                                                                                         cTTATCCGGCCTACACCCGCTACACGCCCCGCAGGCCTGATAAGATGCGCGAGCATCGCATCAGGCATTATCCTCCAACCGCCGGGTCCGGCATACCGAt            >  2:3895662/1‑100 (MQ=38)
                                                                                            atccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTaa         >  2:2840800‑M2/8‑100 (MQ=255)
                                                                                             tccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAAt        <  1:692355‑M2/94‑1 (MQ=255)
                                                                                              ccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg       <  1:2651831‑M2/95‑1 (MQ=255)
                                                                                              ccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg       <  2:3075206‑M2/95‑1 (MQ=255)
                                                                                              ccggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATAAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATg       >  1:2822628‑M2/6‑100 (MQ=255)
                                                                                               cggcCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc      >  2:590225‑M2/5‑100 (MQ=255)
                                                                                                   cTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTa  <  2:3095837/100‑1 (MQ=255)
                                                                                                   cTACACCCGCTACACACCCCGCAGGCCTGAAAAGAGGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTa  <  2:1427381/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTA  >  NC_000913/3217368‑3217566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.