New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3765531 =NA (NA)25 (0.170) 6/168 NT 100% coding (3349/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
?NC_000913 3765547 = 0 (0.000)coding (3365/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor

TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT  >  NC_000913/3765448‑3765646
                                                                                                   |                                                                                                   
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     >  1:594833‑M2/100‑100 (MQ=255)
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     >  2:3791518‑M2/100‑100 (MQ=255)
gtcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcgg                                                                                                     <  2:3174537‑M2/1‑1 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  2:1722454‑M2/99‑100 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  2:764114‑M2/99‑100 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  1:1411041‑M2/99‑100 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  1:145927‑M2/99‑100 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  2:2714602‑M2/99‑100 (MQ=255)
 tcgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  2:3325458‑M2/99‑100 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccgtcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    <  2:2295191‑M2/2‑1 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   <  2:2904046‑M2/3‑1 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   >  2:2059764‑M2/98‑100 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   >  1:4061247‑M2/98‑100 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   <  1:221182‑M2/3‑1 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcg                                                                                                   <  2:3787901‑M2/3‑1 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggc                                                                                                    >  1:4192306‑M2/98‑99 (MQ=255)
  cgcagtggtacaggtggatttttcgcgccggcgtgtacaccgagtccatctggttttgcatctgctccaaggtcaggccgcacgatccccgccaccggc                                                                                                    >  1:4140358‑M2/98‑99 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  >  2:1947962‑M2/97‑100 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  <  1:3583453‑M2/4‑1 (MQ=255)
   gcagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  >  2:366241‑M2/97‑100 (MQ=255)
    gcagtggtacaggtgatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 >  1:4299221‑M2/96‑100 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtccaccggctccatctggttttgcctctgctccacggtcaggccgcacgacgccagccagcggcggc                                                                                                 <  1:3681108‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgtcagccagcggcggc                                                                                                 <  2:2028111‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 >  1:1016254‑M2/96‑100 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:3450791‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:4290946‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:1882008‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:3816264‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:2800856‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  2:3157094‑M2/5‑1 (MQ=255)
    cagtggtacaggtggatttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:3379814‑M2/5‑1 (MQ=255)
    cagtgctacagggggatttttcgcgccggcgtgtacaccgggtccagctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcggc                                                                                                 <  1:3883621‑M2/5‑1 (MQ=255)
       tggtacaggtggttttttcgcgccggcgtgtacaccgggtccatctggttttgcatctgctccacggtcaggccgcacgatgccagccagcggcgg                                                                                                  <  1:3003827‑M2/4‑1 (MQ=255)
                                                                       cggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGCGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCt                                >  1:1205‑M2/29‑98 (MQ=255)
                                                                        ggtcaggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGCCCCCGTGTACACGCCGGCGCGAAAAATCCACCTg                               >  1:2107779‑M2/28‑98 (MQ=255)
                                                                          tcaggccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCCCCTGTAcc                           >  1:1355138‑M2/26‑100 (MQ=255)
                                                                           ggtcaggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa                          >  1:4084547‑M2/25‑100 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGCGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa                          >  1:474998‑M2/25‑100 (MQ=255)
                                                                           caggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCa                          >  1:4097124‑M2/25‑100 (MQ=255)
                                                                            gtcaggccgcacgatgccagccaGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                         >  1:3580404‑M2/24‑100 (MQ=255)
                                                                            gtcaggccgcacgatgccagccaGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGAGTACACGCCGGCGCGGAAAATCCACCTGTAc                            >  1:310116‑M2/24‑97 (MQ=255)
                                                                            gtcaggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                         >  1:4143179‑M2/24‑100 (MQ=255)
                                                                            aggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                         >  1:3011047‑M2/24‑100 (MQ=255)
                                                                            aggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCAc                         >  1:1459925‑M2/24‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:2120401‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  1:4365994‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:419667‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  1:1508289‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:2889283‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGCGTACACGCCGGCGCGAAAATTCCACCTGTACCACt                        >  2:4344204‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  1:2174165‑M2/23‑100 (MQ=255)
                                                                             ggccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGAAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACt                        >  2:2426152‑M2/23‑100 (MQ=255)
                                                                              gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  1:3491103‑M2/22‑100 (MQ=255)
                                                                              gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  2:3501834‑M2/22‑100 (MQ=255)
                                                                              gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  1:2543196‑M2/22‑100 (MQ=255)
                                                                              gccgcacgatgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  1:4274680‑M2/22‑100 (MQ=255)
                                                                              caggccgcacgatgccagccaGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                       >  2:3946755‑M2/22‑100 (MQ=255)
                                                                                      atgccagccagcgGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATc               <  1:419665‑M2/87‑1 (MQ=255)
                                                                                                   GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGc   >  2:3118946‑M2/1‑99 (MQ=255)
                                                                                                   GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  <  1:3422764‑M2/100‑1 (MQ=255)
                                                                                                   GCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCt  >  2:610510‑M2/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCT  >  NC_000913/3765448‑3765646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.