New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4235376 =NA (NA)16 (0.120) 9/156 NT NA coding (1619/1650 nt) pgi glucosephosphate isomerase
?NC_000913 4235411 = NA (NA)intergenic (+4/‑495) pgi/yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein

Only 100 of 217 total aligned reads displayed.

CGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA  >  NC_000913/4235312‑4235510
                                                                                                   |                                                                                                   
cgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcat                                                                                                     >  2:2290711‑M1/65‑100 (MQ=255)
 gtcgcatcaggcatcggttgccgtatgcggcgtaaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    >  2:3124612‑M1/64‑100 (MQ=255)
 gTATTCTGTCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    <  1:2152925/100‑1 (MQ=255)
 gTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    >  1:1487203/1‑100 (MQ=255)
 gTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc                                                                                                    >  2:1530899/1‑100 (MQ=255)
  tcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcg                                                                                                   >  1:1920088‑M1/63‑100 (MQ=255)
   aTTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgt                                                                                                  >  2:1350273/1‑100 (MQ=255)
    ttCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtc                                                                                                 <  2:2718155/100‑1 (MQ=255)
    gcatcaggcatgggttgccgggggcggcgtgaacggcttatccggccgacatatggacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTGATCAtcgtc                                                                                                 >  1:3725978‑M1/61‑100 (MQ=255)
    gcatcaggcatcggttgccgtatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATTAAGCGTGGCGCGGTTAATCCtcg                                                                                                   >  1:1443174‑M1/61‑98 (MQ=255)
    gcatcaggcatcggttgccgggtgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtc                                                                                                 >  1:481124‑M1/61‑100 (MQ=255)
     tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg                                                                                                >  1:3920262/1‑100 (MQ=255)
       tGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGat                                                                                              <  1:25249/100‑1 (MQ=255)
        gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                                                             >  1:1632926/1‑100 (MQ=255)
        gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata                                                                                             <  2:2839046/100‑1 (MQ=255)
         ccAGGGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGatat                                                                                            <  2:1239553/100‑1 (MQ=255)
          cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATg                                                                                           >  2:1015022/1‑100 (MQ=255)
          cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATg                                                                                           >  2:3734778/1‑100 (MQ=255)
          cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATg                                                                                           <  1:320411/100‑1 (MQ=255)
            gagCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTa                                                                                         <  2:977779/100‑1 (MQ=255)
              gCTGAAAGATGATAGAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAgg                                                                                       <  2:3496723/100‑1 (MQ=255)
               cTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCCTCGTCGATCTGTAGGc                                                                                      >  1:1342489/1‑100 (MQ=255)
               cTGAAAGATGAGAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAg                                                                                        <  1:986780/98‑1 (MQ=255)
                tGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGcc                                                                                     <  1:2274145/100‑1 (MQ=255)
                  aaaGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg                                                                                   >  2:4292175/1‑100 (MQ=255)
                     gatgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATa                                                                                >  1:1252091/1‑100 (MQ=255)
                     gatgatAAAGAAATCAGCAGCCACCATGGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGGGGCGGGGTTAATCATCGTCGATATGTAGGCCGGAt                                                                                 <  1:2427197/99‑1 (MQ=255)
                      atgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATaa                                                                               >  2:1027055/1‑100 (MQ=255)
                      atgatAAACAAATCAGCAGCCACCATAGCTCGACCACTGGTCGGACTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATa                                                                                <  2:3514144/99‑1 (MQ=255)
                        gatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAgg                                                                             <  2:2932672/100‑1 (MQ=255)
                        gatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAgg                                                                             <  1:3047991/100‑1 (MQ=255)
                         atgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGc                                                                            >  2:3651116‑M1/40‑100 (MQ=255)
                          tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg                                                                           <  2:30684/100‑1 (MQ=255)
                           aaaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGt                                                                          <  1:2918868/100‑1 (MQ=255)
                            aaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGtt                                                                         >  1:722285/1‑100 (MQ=255)
                              gAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc                                                                        <  2:2628691/99‑1 (MQ=255)
                               aaaTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAc                                                                      >  1:254738/1‑100 (MQ=255)
                                 aTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgc                                                                    >  2:4002705/1‑100 (MQ=255)
                                 aTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgc                                                                    <  2:2438072/100‑1 (MQ=255)
                                  tCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgcc                                                                   >  2:1643501/1‑100 (MQ=255)
                                    agcagcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCAcgccgc                                                                 <  1:1835809/100‑1 (MQ=255)
                                        gcCACGATAGCTGGACCAATGGTCTGATTAACCGCTATAAAGCGTAGCGCGGTTAATCATCGTCGATATGTAGGCCGGATCAGGCGTTCACGCCGCATcc                                                             >  1:1037344/1‑100 (MQ=255)
                                          cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                           >  1:4118798/1‑100 (MQ=255)
                                            cGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGCTCACGCCGCATCCGGCa                                                         >  2:655071/1‑100 (MQ=255)
                                              aTAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAc                                                       <  1:3615867/100‑1 (MQ=255)
                                                 gCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGa                                                    >  2:1614826/1‑100 (MQ=255)
                                                   tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATg                                                  <  2:414705/100‑1 (MQ=255)
                                                   tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATg                                                  >  2:515506/1‑100 (MQ=255)
                                                    cGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc                                                 >  2:2172703/1‑100 (MQ=255)
                                                    cGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGc                                                 >  2:1854380/1‑100 (MQ=255)
                                                     gACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGcc                                                <  2:3846770/100‑1 (MQ=255)
                                                       ccAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTg                                              >  2:3713506/1‑100 (MQ=255)
                                                           tGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGc                                          <  2:669097/100‑1 (MQ=255)
                                                           tGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGc                                          <  2:2298340/100‑1 (MQ=255)
                                                            ggTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCg                                         >  1:2094506/1‑100 (MQ=255)
                                                               atgattaaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg                                      >  2:2858684‑M2/37‑100 (MQ=255)
                                                               atgattaaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcg                                      >  1:1723415‑M2/37‑100 (MQ=255)
                                                                 gattaaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAcgcg                                    >  1:2225688‑M2/35‑100 (MQ=255)
                                                                  ATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCgg                                   <  2:3205847‑M1/100‑1 (MQ=255)
                                                                  ATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCgg                                   <  2:11451‑M1/100‑1 (MQ=255)
                                                                  ATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCgg                                   >  2:2459172‑M1/1‑100 (MQ=255)
                                                                   TTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGt                                  <  2:4083004‑M1/100‑1 (MQ=255)
                                                                    TAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTc                                 <  2:3162189‑M1/100‑1 (MQ=255)
                                                                     aaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg                                >  2:3307578‑M2/31‑100 (MQ=255)
                                                                     aaccgcgccacgctttatagcggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg                                >  2:422993‑M2/31‑100 (MQ=255)
                                                                     AACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg                                <  2:2897287‑M1/100‑1 (MQ=255)
                                                                     AACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg                                >  1:2639203‑M1/1‑100 (MQ=255)
                                                                       CCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgcg                              <  2:2260843‑M1/100‑1 (MQ=255)
                                                                       CCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgcg                              <  2:895606‑M1/100‑1 (MQ=255)
                                                                       CCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcgcg                              <  2:635263‑M1/100‑1 (MQ=255)
                                                                        CGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGt                             <  2:453989‑M1/100‑1 (MQ=255)
                                                                         GCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTc                            >  1:2269074‑M1/1‑100 (MQ=255)
                                                                         GCTAGAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTcg                                >  2:1047281‑M1/1‑96 (MQ=255)
                                                                           tctaACGCGTGGCGCGGTTAATCATCCTCGACATATATGCGGGATAGGTAGTTTACGCCTCAGGCGGCACCCGATGCCGGATgcggcg                                      >  1:3830988/3‑88 (MQ=255)
                                                                            ataAAGCGTGGCGCGGTTAATCATCGTCGATATGTACGCCGGATAAGGCGTTCACGACGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCtt                          <  1:2713898/99‑1 (MQ=255)
                                                                             taAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTAt                        >  2:3614741/1‑100 (MQ=255)
                                                                             taAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGACTTAt                        >  1:616562/1‑100 (MQ=255)
                                                                                aGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAg                     >  2:1261320/1‑100 (MQ=255)
                                                                                 gCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGGTCGCGTCTTATCAgg                    <  2:3663583/100‑1 (MQ=255)
                                                                                 gCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCGCGTCGCATCAgg                    <  2:1677476/100‑1 (MQ=21)
                                                                                  cGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCGCGTCGCATCAGGc                   <  2:3837349/100‑1 (MQ=21)
                                                                                  cGTGGCGCGGTTAATCAGCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCCCGTCGCATCAGGc                   <  1:3653515/100‑1 (MQ=21)
                                                                                   gTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGcc                  <  1:2320850/100‑1 (MQ=255)
                                                                                    tGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGCCGCGGTCGCGTCTTATCAGGCCt                 >  1:403632/1‑100 (MQ=255)
                                                                                     ggCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTa                <  1:3429608/100‑1 (MQ=255)
                                                                                     ggCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCGCGTCGCATCAGGcatc                <  2:3126904/100‑4 (MQ=21)
                                                                                      gcgcGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTAc               >  2:3389116/1‑100 (MQ=255)
                                                                                      gcgcGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATAAGACGCGACCGCGTCGCATCAGGcatcg               <  1:1133274/100‑5 (MQ=21)
                                                                                      ccgatcttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTAc               <  1:1934951‑M2/87‑1 (MQ=255)
                                                                                       cgcgGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACa              <  2:1912099/100‑1 (MQ=255)
                                                                                         cggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAgg            <  1:4042922‑M2/90‑1 (MQ=255)
                                                                                         cggttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGAGTCTTATCAGGCCTACAgg            <  1:3682418‑M2/90‑1 (MQ=255)
                                                                                           gttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTc          >  2:1438258‑M2/9‑100 (MQ=255)
                                                                                           gttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTc          <  1:895603‑M2/92‑1 (MQ=255)
                                                                                           gttaatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTc          >  1:3377997‑M2/9‑100 (MQ=255)
                                                                                             taatcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGATcgg        >  2:1934958‑M2/7‑99 (MQ=255)
                                                                                                tcaTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGc     >  1:746542‑M2/4‑100 (MQ=255)
                                                                                                 caTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGcc    >  2:1299080‑M2/3‑100 (MQ=255)
                                                                                                 caTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGcc    >  1:1605934‑M2/3‑100 (MQ=255)
                                                                                                  aTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGcc    <  2:591720‑M2/98‑1 (MQ=255)
                                                                                                   |                                                                                                   
CGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGA  >  NC_000913/4235312‑4235510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.