New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4415962 =NA (NA)17 (0.120) 8/166 NT NA noncoding (5/34 nt) REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4415992 = NA (NA)intergenic (+92/+25) aidB/yjfN DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein

Only 100 of 230 total aligned reads displayed.

TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACCA  >  NC_000913/4415894‑4416091
                                                                                                  |                                                                                                   
tgtgtAAGCGTATACGACTGATGCGACGCCGGTTTCGATTAACTAAATGAAATATGTGAAAAGTGTAGGCCGGACAAGGAGCACGCCCCGCATCCGGCAt                                                                                                    >  1:3588056/1‑100 (MQ=255)
gcagcctgataactggcgcgtacaggcgatactgtatgcatgagtgtcatctacagcaaatgaacaatGCCGGACAAGGCGCTCGCGCCGCATCCGGCAt                                                                                                    >  1:1097379‑M1/69‑100 (MQ=255)
gcagcctgataactggcgcgtacaggcgatactgtatgcatgagtgtcatctacagcaaatgaacaatGCCGGACAAGGCGCTCGCGCCGCATCCGGCAt                                                                                                    >  1:3238258‑M1/69‑100 (MQ=255)
gcagcctgataactggcgcgtacaggcgatactgtatgcatgagtgtcatctacagcaaatgaacaatGCCGGACAAGGCGCTCGCGCCGCATCCGGCAt                                                                                                    >  2:1420575‑M1/69‑100 (MQ=255)
  tgtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTg                                                                                                  <  1:829560/100‑1 (MQ=255)
  agcctgataactggcgcgtacaggcgatactgtatgcatgagtgtcatctacagcaaatgaacaatGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTg                                                                                                  >  2:952534‑M1/67‑100 (MQ=255)
  agcctgataactggcgcgtacaggcgatactgtatgcatgagtgtcatctacagcaaatgaacaatGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTg                                                                                                  >  2:1317327‑M1/67‑100 (MQ=255)
   gtAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGt                                                                                                 >  1:475113/1‑100 (MQ=255)
    tAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGTCCGGACAATGCGCTCGCGCCGCATCCGGCATTGtt                                                                                                <  1:61169/100‑1 (MQ=255)
        cGTATACGACTTATGCGACGCTGGGTTCGATTAACTAAATGAGAGCTGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCAtt                                                                                            <  1:986455/100‑1 (MQ=37)
        cGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCAtt                                                                                            <  2:1367477/100‑1 (MQ=255)
         gTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCAttt                                                                                           <  2:1936439/100‑1 (MQ=255)
          tataCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTg                                                                                          <  1:361403/100‑1 (MQ=255)
           ataCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAGGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGc                                                                                         >  1:2326153/1‑100 (MQ=255)
           ataCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTg                                                                                          >  1:28469/1‑99 (MQ=255)
            taCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGc                                                                                         >  2:173603/1‑99 (MQ=255)
            taCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCt                                                                                        >  2:2788585/1‑100 (MQ=255)
             aCGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTg                                                                                       <  2:1519549/100‑1 (MQ=255)
              cGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGc                                                                                         <  1:1785598/97‑1 (MQ=255)
               gACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTa                                                                                     <  1:395036/100‑1 (MQ=255)
                  tGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGAt                                                                                  <  2:3921924/100‑1 (MQ=255)
                   gATGCGACGCTGGTTTCGATTAACTAACTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATg                                                                                 >  1:3330998/1‑100 (MQ=255)
                   gATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATg                                                                                 >  1:3137829/1‑100 (MQ=255)
                      gCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCCTCCGGCATTGTTCATTTGCTGTAGATGac                                                                               >  2:686505/1‑99 (MQ=255)
                      gCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGaca                                                                              >  1:1038403/1‑100 (MQ=255)
                      gCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGaca                                                                              >  1:2517513/1‑100 (MQ=255)
                      gCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGACCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGaca                                                                              >  1:2447000/1‑100 (MQ=255)
                             tGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGc                                                                       >  2:2419857/1‑100 (MQ=255)
                              ggTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCTGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCa                                                                      <  1:2412114/100‑1 (MQ=255)
                              ggTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCa                                                                      <  1:4411352/100‑1 (MQ=255)
                              ggTTTCGATTAACTAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCAt                                                                     >  1:1436007/1‑100 (MQ=255)
                                    gATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGt                                                                <  2:4008956/100‑1 (MQ=255)
                                        aaCTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCg                                                            <  2:628107/100‑1 (MQ=255)
                                         aCTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGc                                                           <  2:3864287/100‑1 (MQ=255)
                                         aCTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGc                                                           >  1:1494987/1‑100 (MQ=255)
                                          cTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGcc                                                          <  2:1026086/100‑1 (MQ=255)
                                          cTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCCCTCGCGCCGCATCCGGCATTGTTCATTTTCTGTAGATGACACTCATGCATACAGTATCGcc                                                          <  2:4191320/100‑1 (MQ=255)
                                           tAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGcc                                                          <  1:1372344/99‑1 (MQ=255)
                                           tAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCt                                                         >  2:3675796/1‑100 (MQ=255)
                                            aaaTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTATATGATAGTCTTGCATACAGTATCGCCTg                                                        <  1:182177/100‑1 (MQ=38)
                                            aaaTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGccag                                                        >  1:1010271/1‑98 (MQ=255)
                                             naTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGt                                                       >  1:324501/2‑100 (MQ=255)
                                             aaTGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGt                                                       <  1:308782/100‑1 (MQ=255)
                                              aTGAAATATGTGAAAATTGTAGGCCGAACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTa                                                      >  2:2689319/1‑100 (MQ=255)
                                               tGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTAc                                                     <  1:4074801/100‑1 (MQ=255)
                                                  aaTATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTATAGATGACACTCATGCATACAGTATCGCCTGTAcgcg                                                  <  1:2347314/100‑1 (MQ=255)
                                                    tatGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGcc                                                <  2:3556320/100‑1 (MQ=255)
                                                      tgtgAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAg                                              <  2:3770257/100‑1 (MQ=255)
                                                      tgtgAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAg                                              >  2:609952/1‑100 (MQ=255)
                                                      tgtgAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAg                                              <  1:1731893/100‑1 (MQ=255)
                                                      tctgAAAATTGTAAGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAg                                              >  2:2990887/3‑100 (MQ=255)
                                                        tgAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGtt                                            >  1:2174044/1‑100 (MQ=255)
                                                           aaaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATc                                         <  2:285208/100‑1 (MQ=255)
                                                           aaaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCAGTGTTCATTGGCGGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATc                                         >  1:2571966/1‑100 (MQ=255)
                                                            aaTTGTAGGCCGGACTAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCa                                        <  2:4354439/100‑1 (MQ=255)
                                                            aaTTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCa                                        >  2:2286564/1‑100 (MQ=255)
                                                             gaacaatgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAg                                       >  1:6990‑M2/38‑100 (MQ=255)
                                                               acaatgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgc                                     >  2:311527‑M2/36‑100 (MQ=255)
                                                               acaatgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgc                                     >  2:1899281‑M2/36‑100 (MQ=255)
                                                                gTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgct                                    <  2:730992/100‑1 (MQ=255)
                                                                caatgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgct                                    >  2:2076048‑M2/35‑100 (MQ=255)
                                                                 aatgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATAGCCTGTACGCGCAAGTTATCAGgct                                    >  2:4397557‑M2/34‑99 (MQ=255)
                                                                  atgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgc                                  >  2:3959200‑M2/33‑100 (MQ=255)
                                                                  atgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgc                                  >  2:2098817‑M2/33‑100 (MQ=255)
                                                                   tgccggatgcggcgcgagcgccttgtccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgct                                 >  2:3422352‑M2/32‑100 (MQ=255)
                                                                   ggCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgct                                 >  2:4275619/1‑100 (MQ=255)
                                                                   ggCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgct                                 >  2:4327685/1‑100 (MQ=255)
                                                                   ggCCGGACAAGGCGCGCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGgctgc                                  >  1:3534430/1‑99 (MQ=255)
                                                                    GCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGctgctg                                <  1:1235102‑M1/100‑1 (MQ=255)
                                                                     CCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCCTTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTgg                               >  2:3100933‑M1/1‑100 (MQ=255)
                                                                     CCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTgg                               >  2:4052336‑M1/1‑100 (MQ=255)
                                                                     CCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTgg                               >  2:3181051‑M1/1‑100 (MQ=255)
                                                                       ggACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTTCTGTAGATGACACCCATGCATAAAGTATCGACTGTACGAACCAGTTATTAGGCTTCTGGt                              >  1:1939579/1‑99 (MQ=37)
                                                                       GGACAAGGCGCTCGGGCCGCATCCGACATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTc                             >  1:1110356‑M1/1‑100 (MQ=255)
                                                                        GACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCt                            <  1:984959‑M1/100‑1 (MQ=255)
                                                                        GACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCt                            >  2:3351290‑M1/1‑100 (MQ=255)
                                                                          cAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTc                          <  1:2990869/100‑1 (MQ=255)
                                                                          cAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTc                          <  2:2033082/100‑1 (MQ=255)
                                                                            aGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGt                        >  2:511100/1‑100 (MQ=255)
                                                                            aGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGt                        <  2:1846313/100‑1 (MQ=255)
                                                                               cgcTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCCGGCTGCTGGTCTTCGTACa                     >  1:1682780/1‑100 (MQ=255)
                                                                                 cTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATg                   >  2:2056389/1‑100 (MQ=255)
                                                                                  tCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATgg                  <  2:541748/100‑1 (MQ=255)
                                                                                  tCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATgg                  >  2:393966/1‑100 (MQ=255)
                                                                                   cgcgCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGt                 >  2:1254933/1‑100 (MQ=255)
                                                                                     cgccgcATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGt                 <  1:4263246/98‑1 (MQ=255)
                                                                                      ggcgcATCCGGCATTGTTCATTCGCTGTAGATGACACTCATGCATACATTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATgg                  <  1:1333669/94‑1 (MQ=255)
                                                                                      gccgcATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGtaat              <  2:2174051/100‑1 (MQ=255)
                                                                                          cATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATg          >  1:1553697/1‑100 (MQ=255)
                                                                                          cATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATg          <  1:3914190/100‑1 (MQ=255)
                                                                                          cATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATg          <  1:2671857/100‑1 (MQ=255)
                                                                                          cATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATg          >  2:837628/1‑100 (MQ=255)
                                                                                            tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCg        >  2:3510638‑M2/7‑100 (MQ=255)
                                                                                            tccggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCg        <  1:1998849‑M2/94‑1 (MQ=255)
                                                                                             cctgcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCgg       <  1:3794337‑M2/95‑1 (MQ=255)
                                                                                              cggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGt      >  1:675448‑M2/5‑100 (MQ=255)
                                                                                              cggcATTGTTCATTTGCGGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCgg       <  2:2564190‑M2/95‑1 (MQ=255)
                                                                                               ggcATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTa     >  1:4096735‑M2/4‑100 (MQ=255)
                                                                                                  aTTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACCa  <  2:1225726/100‑1 (MQ=255)
                                                                                                  aTTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACCa  <  1:516382/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCTCGCGCCGCATCCGGCATTGTTCATTTGCTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTAATAATGCGGTACCA  >  NC_000913/4415894‑4416091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.