BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	377335 =	NA (NA)	18 (0.120)	8/164	NT	NA	noncoding (1/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
*	?	NC_000913	377368 =	NA (NA)	18 (0.120)	8/164	NT	NA	noncoding (34/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 231 total aligned reads displayed.

CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGC  >  NC_000913/377269‑377467

cccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                                                     >  1:1640753/1‑100 (MQ=255)

  cGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTa                                                                                                   <  2:1508405/100‑1 (MQ=255)

   gTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                                                  <  2:3162160/100‑1 (MQ=255)

   cgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAc                                                                                                  >  2:2273031‑M1/64‑100 (MQ=255)

      tGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGt                                                                                               >  2:2226165/1‑100 (MQ=255)

       gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGTGTCTTATCAGGCCTACGGtt                                                                                              >  2:4309295/1‑100 (MQ=255)

        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  2:1338582/1‑100 (MQ=255)

        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  2:27619/1‑100 (MQ=255)

        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  2:1687145/1‑100 (MQ=255)

        ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                                                             >  2:1684175/1‑100 (MQ=255)

              tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                                                       >  2:2176213/1‑100 (MQ=255)

              tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                                                       <  1:1757420/100‑1 (MQ=255)

              tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                                                       <  2:3303044/100‑1 (MQ=255)

              tCAAAGTGCCTGATGATTTGACGTGGTAAATATAGACAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                                                        <  1:2973895/99‑1 (MQ=255)

               cAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCg                                                                                      <  2:3223957/100‑1 (MQ=255)

                 aaGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGaa                                                                                    >  2:1559981/1‑100 (MQ=255)

                    tGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGAGGCCTGATGCGACGCTATGCGCGTCTTATCAGTCCTACGGGTTATGGGCGAAgt                                                                                  <  1:771815/99‑1 (MQ=255)

                     gCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                                                >  2:2545397/1‑100 (MQ=255)

                     gCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                                                >  2:1749626/1‑100 (MQ=255)

                     gCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                                                >  2:139313/1‑100 (MQ=255)

                     gCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                                                                >  1:4069555/1‑100 (MQ=255)

                      ccTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTa                                                                               >  1:2385729/1‑100 (MQ=255)

                       cTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                                                              >  2:3085516/1‑100 (MQ=255)

                        tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGa                                                                             >  2:4133393/1‑100 (MQ=255)

                          atgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGa                                                                             >  1:931379/1‑98 (MQ=255)

                          atgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGAcc                                                                           >  1:2091555/1‑100 (MQ=255)

                           tgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                                                          >  1:3892582/1‑100 (MQ=255)

                           tgatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCg                                                                          >  2:2837539/1‑100 (MQ=255)

                            gatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTGATGGGCGAAGTGTAGACCgg                                                                         <  1:2693742/100‑1 (MQ=255)

                             atTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGa                                                                        >  2:4261707/1‑100 (MQ=255)

                                tGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                                                     <  2:2615772/100‑1 (MQ=255)

                                tGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                                                     >  1:4210741/1‑100 (MQ=255)

                                   tgtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGc                                                                  >  1:1000151/1‑100 (MQ=255)

                                    gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                                                                 >  2:2317723/1‑100 (MQ=255)

                                     tgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGt                                                                <  1:3319665/100‑1 (MQ=255)

                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               >  1:3908628/1‑100 (MQ=255)

                                      ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                               <  2:2781491/100‑1 (MQ=255)

                                        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGGTAAGGCGTTCa                                                             <  1:2318241/100‑1 (MQ=255)

                                        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCa                                                             <  2:3462596/100‑1 (MQ=255)

                                        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCa                                                             <  1:2075614/100‑1 (MQ=255)

                                        tAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCa                                                             >  1:1774305/1‑100 (MQ=255)

                                         aaaCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTGCGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAc                                                            <  2:85143/100‑1 (MQ=255)

                                          aaCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCa                                                             >  1:1792474/1‑98 (MQ=255)

                                          aaCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcg                                                           >  2:2308030/1‑100 (MQ=255)

                                             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccg                                                        <  2:2557023/100‑1 (MQ=255)

                                             aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccg                                                        <  1:1695841/100‑1 (MQ=255)

                                                   aaGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                  <  2:4248676/100‑1 (MQ=255)

                                                    aGTCGTGCGCAGATGCCTGATGCGACGCTAAGCGCGTGTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccttatcc                                                   <  1:3095812/98‑7 (MQ=17)

                                                     gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                                                <  2:3754593/100‑1 (MQ=255)

                                                       cttGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa                                               <  1:3438306/97‑1 (MQ=255)

                                                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccgagatcggaag                                              >  2:965874/1‑90 (MQ=255)

                                                       cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg                                              >  1:1315640/1‑100 (MQ=255)

                                                        gTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg                                              >  2:3989479/1‑99 (MQ=255)

                                                        gTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt                                             >  2:265586/1‑100 (MQ=255)

                                                        gTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt                                             <  1:1952973/100‑1 (MQ=255)

                                                        gTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGt                                             <  1:2215510/100‑1 (MQ=255)

                                                         tGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGGCCGGATGCGGCGTGAACGCCTTATCCggtctac                                            <  2:1705224/100‑6 (MQ=14)

                                                          gcgcAGTTGCCTGATGCGCCGCTATGCGCGTCTTATCAGGCTTACGGATTATGGGCGAATTGTAGCCCGGATAAGGCGTTCACGCCGCATACGGCAGt                                             >  1:372568/1‑98 (MQ=14)

                                                           cgcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGt                                          >  2:3671691/1‑100 (MQ=255)

                                                            gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTg                                         >  2:1951874/1‑100 (MQ=255)

                                                            ccgtaggcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTg                                         >  1:2225286‑M2/40‑100 (MQ=255)

                                                            ccgtaggcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGCGTAGGGCGTCCACGCCGCATCCGGCAGTCGTg                                         >  1:3758778‑M2/40‑100 (MQ=255)

                                                            ccgtaggcctgataagacgcgcatagcgtcgcatcaggcCTACGGTATATGGGCGAAGTGTAGACCGGGTAAGGCGTTCACGCCGCATCCGGCAGTCGTg                                         >  1:2159060‑M2/40‑100 (MQ=255)

                                                             cgtaggcctgataagacgcgcaaagcgtcgcatcaggcCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc                                        >  1:3243030‑M2/39‑100 (MQ=255)

                                                                 ggcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCa                                    >  1:1367629‑M2/35‑100 (MQ=255)

                                                                 ggcctgataagacgcgcaaagcgtcgcatcaggcCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGtcgtgctatt                                    >  1:609075‑M2/35‑96 (MQ=255)

                                                                  gcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt                                   >  2:3580713‑M2/34‑100 (MQ=255)

                                                                  gcctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt                                   >  1:3754952‑M2/34‑100 (MQ=255)

                                                                   cctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAt                                   >  1:1292709‑M2/33‑99 (MQ=255)

                                                                   cctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATg                                  >  1:336405‑M2/33‑100 (MQ=255)

                                                                   CCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATg                                  >  1:452947‑M1/1‑100 (MQ=255)

                                                                   CCTGATGCGACGCTATGCACGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATg                                  <  2:2729123‑M1/100‑1 (MQ=255)

                                                                    ctgataagacgcgcatagcgtcttatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGc                                 >  2:1273917‑M2/32‑100 (MQ=255)

                                                                    ctgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGc                                 >  2:7676‑M2/32‑100 (MQ=255)

                                                                     tgataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTCCTACATGcc                                >  2:3964191‑M2/31‑100 (MQ=255)

                                                                      gataagacgcgcatagcgtcgcatcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCt                               >  1:4302537‑M2/30‑100 (MQ=255)

                                                                         gCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGAt                            >  2:581569/1‑100 (MQ=255)

                                                                           gACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGc                          <  2:1640760/100‑1 (MQ=255)

                                                                            aCGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCg                         <  1:3851661/100‑1 (MQ=255)

                                                                             cGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGa                        <  1:94992/100‑1 (MQ=255)

                                                                              gCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGAc                       <  2:1082089/100‑1 (MQ=255)

                                                                                 aTGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCt                    <  2:2122675/100‑1 (MQ=255)

                                                                                  tGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCtt                   >  2:1022311/1‑100 (MQ=255)

                                                                                  tGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCtt                   >  2:1940482/1‑100 (MQ=255)

                                                                                   gcgcGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCttt                  >  2:3874782/1‑100 (MQ=255)

                                                                                    cgcgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCttt                  >  1:522241/1‑99 (MQ=255)

                                                                                    cgcgTCTTATCAGGCCTACGGTTTATAGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTg                 >  2:2692582/1‑100 (MQ=255)

                                                                                      cgTCTTATCAGGGATACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTgcg               <  1:4289493/100‑1 (MQ=255)

                                                                                      cgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTgcg               <  1:2797821/100‑1 (MQ=255)

                                                                                      cgTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTgcg               <  2:611949/100‑1 (MQ=255)

                                                                                       gTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACAGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATTCCTGATGCGACGCgtt                  >  1:2711542/1‑96 (MQ=255)

                                                                                         cTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGt            >  2:2513042/1‑100 (MQ=255)

                                                                                          ttATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTc           >  2:1827495/1‑100 (MQ=255)

                                                                                           tATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCt          <  1:981356/100‑1 (MQ=255)

                                                                                            atcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCtt         <  2:535171‑M2/93‑1 (MQ=255)

                                                                                              caggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTAt       >  1:2499601‑M2/6‑100 (MQ=255)

                                                                                              caggcCTACGGTTTATGGGCGAAGTGTAGACCGAATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCTATGCCTGATACGACGCTTTGCGCGTCGtag       >  1:2839971‑M2/6‑99 (MQ=255)

                                                                                                ggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTa        <  1:329241‑M2/94‑1 (MQ=255)

                                                                                                ggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATc      <  1:3170853‑M2/96‑1 (MQ=255)

                                                                                                 gcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAg    >  2:3124890‑M2/3‑100 (MQ=255)

CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGC  >  NC_000913/377269‑377467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.