New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 734801NA (NA)11 (0.070) 9/168 NT NA pseudogene (669/1521 nt) rhsO pseudogene, Rhs family
?NC_000913 = 734817 NA (NA)pseudogene (685/1521 nt) rhsO pseudogene, Rhs family

Only 100 of 182 total aligned reads displayed.

GTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCG  >  NC_000913/734718‑734915
                                                                                                   |                                                                                                  
ttcactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGt                                                                                                    >  2:2493706‑M2/42‑100 (MQ=255)
 tcactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTg                                                                                                   >  2:1338110‑M2/41‑100 (MQ=255)
  cactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGc                                                                                                  >  1:95280‑M2/40‑100 (MQ=255)
  cactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGc                                                                                                  >  1:3286087‑M2/40‑100 (MQ=255)
   actttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGAGCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTCCg                                                                                                 >  2:2152031‑M2/39‑100 (MQ=255)
   actttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                                                                                 >  2:1182732‑M2/39‑100 (MQ=255)
    ctttccagccggtcgagcatctgcaccagcaccggctGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                                                                                >  2:3644501‑M2/38‑100 (MQ=255)
    ctttccagccggtcgagcatctgcaccagcaccggcgGGAACGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                                                                                >  2:2021714‑M2/38‑100 (MQ=255)
    ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                                                                                >  2:870413‑M2/38‑100 (MQ=255)
    ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                                                                                 >  1:2102409‑M2/38‑99 (MQ=255)
    ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGCGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                                                                                >  1:2512262‑M2/38‑100 (MQ=255)
     ctttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGc                                                                                               >  2:2048058‑M2/37‑100 (MQ=255)
     ctttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGc                                                                                               >  1:2445233‑M2/37‑100 (MQ=255)
      ttccagccggtcgagcatctgcacccgcaccggctGGAAAGTGAAATCATGGCTGACCGGGTGCGTGCGGAAAGCCGCCGCTGGCTGGCATCGTGCGGc                                                                                               >  1:729251‑M2/36‑99 (MQ=255)
      ttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGcc                                                                                              >  2:1676438‑M2/36‑100 (MQ=255)
       tccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGc                                                                                               >  1:3706023‑M2/35‑98 (MQ=255)
       tccagccagtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTAAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCt                                                                                             >  1:2321964‑M2/35‑100 (MQ=255)
        tccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTg                                                                                            >  2:3344485‑M2/34‑100 (MQ=255)
        ccagccggtcgagcatctgcaccagcaccggctGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTg                                                                                            >  2:2276014‑M2/34‑100 (MQ=255)
        ccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTg                                                                                            >  2:2056039‑M2/34‑100 (MQ=255)
        ccagccggtcgagcatctgcaccagcaccggcgGGAAAGGGAAATCCTGGCTGACCGGGTGAGTGAGGAAAACCGCCGCTGGCTGGCATCGTGCGGCCTg                                                                                            >  2:4404866‑M2/34‑100 (MQ=255)
         ccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGa                                                                                           >  1:2410212‑M2/33‑100 (MQ=255)
                 gCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAg                                                                                   <  2:363582/100‑1 (MQ=31)
                 gCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAg                                                                                   <  1:1051734/100‑1 (MQ=31)
                 gCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAg                                                                                   >  2:3879406/1‑100 (MQ=31)
                 gCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAg                                                                                   <  1:3688967/100‑1 (MQ=31)
                  cTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGc                                                                                  <  1:1971158/100‑1 (MQ=32)
                  cTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGc                                                                                  <  1:4177317/100‑1 (MQ=32)
                     gTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGa                                                                               <  1:4063555/100‑1 (MQ=33)
                      tGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGAt                                                                              >  1:2276201/1‑100 (MQ=33)
                      tGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGAt                                                                              <  1:3369458/100‑1 (MQ=33)
                      tGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGAt                                                                              >  2:3466843/1‑100 (MQ=33)
                       gCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGAt                                                                              <  1:3968226/99‑1 (MQ=33)
                       gCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATg                                                                             <  1:1614664/100‑1 (MQ=32)
                        cAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGc                                                                            <  1:3454043/100‑1 (MQ=33)
                        cAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGc                                                                            <  1:2526633/100‑1 (MQ=33)
                         aGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCa                                                                           <  1:2950482/100‑1 (MQ=33)
                          gATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCaa                                                                          >  2:771404/1‑100 (MQ=32)
                             gCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAc                                                                       >  2:4154454/1‑100 (MQ=32)
                             gCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAc                                                                       >  2:3793629/1‑100 (MQ=33)
                              cTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAcc                                                                      <  2:1208701/100‑1 (MQ=33)
                              cTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAAcc                                                                      >  1:1770444/1‑100 (MQ=32)
                               tCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGAGCGGCCTGACGGTGGAGCAGATGCAAAActa                                                                     <  2:2968561/100‑3 (MQ=18)
                                 gaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGa                                                                   <  1:3894852‑M2/92‑1 (MQ=255)
                                 gACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCCTCGTGCGGCCTGACGGTGGAGCAGATGCAAAAcc                                                                      >  1:1382409/1‑97 (MQ=17)
                                 gACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGa                                                                   <  1:4271637/100‑1 (MQ=33)
                                  aCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGAt                                                                  >  2:310876/1‑100 (MQ=33)
                                  aCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGAt                                                                  <  2:1284216/100‑1 (MQ=33)
                                  aCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGAt                                                                  >  1:1026350/1‑100 (MQ=32)
                                     ggCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGa                                                               >  2:75791/1‑100 (MQ=33)
                                              gTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTa                                                      >  2:1069912/1‑100 (MQ=33)
                                              gTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTa                                                      >  2:374940/1‑100 (MQ=33)
                                              gTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGACATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATAGa                                                               >  1:4313923/1‑91 (MQ=12)
                                               tGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTac                                                     <  2:342040/100‑1 (MQ=33)
                                               tGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTac                                                     >  2:4087624/1‑100 (MQ=33)
                                               tGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTac                                                     >  1:3198242/1‑100 (MQ=33)
                                                gAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTaca                                                    >  2:1830492/1‑100 (MQ=33)
                                                gAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTaca                                                    <  2:4053291/100‑1 (MQ=33)
                                                 aaaTCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTacac                                                   <  1:4398980/100‑1 (MQ=33)
                                                  aaTCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTa                                                      >  1:1225354/1‑96 (MQ=32)
                                                  aaTCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACg                                                  >  2:1669788/1‑100 (MQ=33)
                                                  aaTCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACg                                                  >  1:133394/1‑100 (MQ=33)
                                                    tCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGcc                                                <  2:3286068/100‑1 (MQ=33)
                                                      cTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCCGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCgg                                              >  1:3403849/1‑100 (MQ=18)
                                                       tGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGgc                                             <  1:4228102/100‑1 (MQ=33)
                                                        ggCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGgcg                                            >  2:1479528/1‑100 (MQ=33)
                                                            gACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaa                                        >  2:2221495/1‑100 (MQ=33)
                                                            gACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGaa                                        >  2:4228785/1‑100 (MQ=33)
                                                                 ggTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATc                                   <  2:581760/100‑1 (MQ=32)
                                                                  gtgagtgaGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATcc                                  <  2:73766/100‑1 (MQ=33)
                                                                   tgagtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCa                                 >  2:1945608/1‑100 (MQ=33)
                                                                    gagtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCa                                 >  1:4147191/1‑99 (MQ=32)
                                                                    gagtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAc                                <  2:1710880/100‑1 (MQ=33)
                                                                     agtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAcc                               <  2:3832279/100‑1 (MQ=33)
                                                                     agtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAcc                               <  1:2221485/100‑1 (MQ=33)
                                                                     agtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAcc                               <  1:206892/100‑1 (MQ=33)
                                                                     agtgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCAcc                               <  1:20048/100‑1 (MQ=33)
                                                                      gtgagGAAAGCCGCCGCTGGCTTGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTGCACGCCGGCGCGAAAAATCCACCt                              >  2:401289/1‑100 (MQ=16)
                                                                       tgagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTg                             <  2:557262/100‑1 (MQ=33)
                                                                        gagGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGt                            >  2:2444838/1‑100 (MQ=33)
                                                                         agGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTa                           <  1:1441980/100‑1 (MQ=33)
                                                                         agGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTa                           <  1:299390/100‑1 (MQ=32)
                                                                          ggAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAc                          <  1:3385490/100‑1 (MQ=33)
                                                                           gAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTAcc                         <  1:2803743/100‑1 (MQ=33)
                                                                               gccgccGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                     >  2:3192099/1‑100 (MQ=33)
                                                                               gccgccGCTGGCTGGCAACGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTg                     >  1:3155718/1‑100 (MQ=17)
                                                                               gccgccGCTGGCAGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACAAAAAAAAAAAAAAAATCCACCTGTACCACTg                     <  1:865772/100‑1 (MQ=11)
                                                                                ccgccgCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAACATCCACCTGTACCACTGc                    >  1:609498/1‑100 (MQ=17)
                                                                                ccgccgCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc                    <  1:3631379/100‑1 (MQ=33)
                                                                                ccgccgCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGc                    >  2:3669607/1‑100 (MQ=33)
                                                                                 cgccgcTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCTGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg                   <  1:777579/100‑1 (MQ=17)
                                                                                 cgccgcTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCg                   >  2:2562874/1‑100 (MQ=33)
                                                                                  gccgcTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGa                  <  1:1864215/100‑1 (MQ=33)
                                                                                   ccgcTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAc                 <  2:4349498/100‑1 (MQ=32)
                                                                                    cgcTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAcc                >  1:1677851/1‑100 (MQ=32)
                                                                                    cgcTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGAc                 <  1:1495822/99‑1 (MQ=33)
                                                                                              cATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCt      <  2:2638183/100‑1 (MQ=33)
                                                                                              cATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCt      >  2:2358131/1‑100 (MQ=32)
                                                                                                  gTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCg  >  2:3267791/1‑100 (MQ=32)
                                                                                                  gTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCg  >  2:608276/1‑100 (MQ=33)
                                                                                                   |                                                                                                  
GTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACGGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCG  >  NC_000913/734718‑734915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.