| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,970 | G→A | 29.0% | intergenic (‑180/+128) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,970 | 0 | G | A | 29.0% | 468.1 / 200.3 | 261 | intergenic (‑180/+128) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base G (98/85); new base A (70/5); total (171/90) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.18e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.40e-02 | |||||||||||
Only 100 of 275 total aligned reads displayed.
CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 | cAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATg > 2:2318646/1‑100 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGCTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 1:888111/1‑100 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:209480/1‑100 (MQ=255) gggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcg > 2:3549901/1‑100 (MQ=255) ggAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATgcgg < 2:2953282/100‑1 (MQ=255) aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt > 1:3028968/1‑100 (MQ=255) aTGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGt > 2:1241300/1‑100 (MQ=255) aaGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTaa < 2:1649013/100‑1 (MQ=255) tATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGc < 2:505637/100‑1 (MQ=255) aTTGCTGCCGGATGGCGCTGCACGCAGAGGGACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc > 1:701439/1‑100 (MQ=255) aTTGCTGCCGGATAGCGCTGCACGCAGAGGCACAGCGCAACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGcc > 1:2722073/1‑100 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt < 1:2929442/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCGGAGGCACAGCGCCACGGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2363313/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1550010/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:1254826/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCGACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGGCTTATcc > 1:3526511/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:3346639/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3028986/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:4139052/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2237018/100‑2 (MQ=37) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTCTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3113597/100‑1 (MQ=255) aTGGCGCTGCACGCAGTGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2171244/100‑3 (MQ=25) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2704199/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:2433928/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:836792/1‑100 (MQ=255) atGCACGCAGAGGCACAGCGCCCCCGGGTATAGAGGTTGTTGACAAAGGGCGCTTTGTTTATGACGGATTCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa > 1:3377083/2‑100 (MQ=21) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaag < 1:125109/100‑11 (MQ=21) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 2:3239664/1‑100 (MQ=255) cgatctggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:556371/94‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1562290/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1161768/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 1:2284197/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:1373877/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:2648129/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3809608/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:2374408/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:1063379/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:3290612/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AACATCGTGCAAATTCAAt > 1:202565/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:1412288/100‑1 (MQ=255) aGCGCCACCGGATATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:1886058/99‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:2841549/1‑100 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:3938411/1‑100 (MQ=255) aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:2591134/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCa < 1:169121/99‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAg < 2:378939/100‑1 (MQ=255) gagTATACAGATTGTTGACAAAGTTCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑a < 1:405704/98‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCCGATTCGGCGTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAGATTCAATACATTGCAG‑‑‑A‑At‑t > 1:1484584/1‑100 (MQ=18) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑At‑ttt > 2:1726913/1‑100 (MQ=255) taCAGATTGTTGACAAAGAGCGCTGAGTTTATGCCGGATGCGGCGGTAACGCCTTATCCGGCCTAC‑AACATCGTGCAAATTCAATACATTGAAG‑‑‑A‑At‑ttt > 1:3845306/1‑100 (MQ=17) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTc > 2:1940308/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑g < 1:3501177/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑g < 2:2995149/100‑1 (MQ=255) aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGACCTAC‑AACATCGTGCAAGTTTAATCCATTGCAG‑‑‑A‑AT‑TTTC‑‑Gt > 2:467455/1‑100 (MQ=18) gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTa < 1:3150194/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAgg < 1:247495/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAG‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGcc > 1:3088648/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGcc > 2:3589071/1‑100 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGcc < 2:715622/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGa > 1:3744466/1‑100 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 1:2205020/100‑1 (MQ=255) ngcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg > 1:3556827/2‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 2:2691949/100‑1 (MQ=255) tttttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCAG‑‑‑G‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAgcgc > 2:209628/10‑100 (MQ=18) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa > 1:737346/1‑100 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 2:3772392/1‑100 (MQ=255) cttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCAT‑‑‑G‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAgcgc > 2:945490/8‑98 (MQ=17) ttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATc > 2:4343869/7‑100 (MQ=18) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255) tgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:2264423/6‑99 (MQ=17) gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCAC‑‑‑C‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTGCAG‑‑‑G‑AT‑ACGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2582802/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATGCAATACATTGCAG‑‑‑A‑AG‑TTTC‑‑GTAGACCTGATAAGCGGAGCGCATCAg > 1:2980673/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:3253062/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCAG‑‑‑G‑AA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAgg > 1:2266878/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAG‑‑‑A‑GA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2553222/4‑100 (MQ=17) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 1:3266858/1‑100 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCAATTCA‑AC‑TT‑‑‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:4188952/3‑100 (MQ=21) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:1966884/100‑1 (MQ=255) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:380383/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:685377/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑G‑‑‑A‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:4283658/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGCAA‑‑‑T‑TC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGct > 2:868667/2‑99 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCAG‑‑‑A‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1609293/2‑100 (MQ=14) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGTGG‑‑‑G‑CT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2075891/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCAA‑‑‑G‑AT‑TTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1361450/2‑100 (MQ=17) ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1816571/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:944810/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑G‑‑‑A‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2747060/1‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAACATATTGC‑‑‑‑‑A‑AT‑TCTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:4108919/1‑98 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCAT‑‑‑G‑AG‑CCAC‑‑GTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCAT‑‑‑G‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1820155/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCAT‑‑‑G‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGACa > 2:1010024/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCAG‑‑‑G‑AG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2227271/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTGCAG‑‑‑AGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3361635/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCAG‑‑‑G‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1330197/1‑100 (MQ=21) ccGGATAAGGCGGTCACTCCGCATCCGACCTAC‑‑AAATCATGCAAATCCAAAATATTGCAG‑‑‑G‑AG‑GTAT‑‑GTATGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:4302543/1‑99 (MQ=18) gATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt < 1:1232349/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:2461829/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2022169/1‑100 (MQ=255) | CAGGGAATGAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCAG‑‑‑A‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCC > NC_000913/3705871‑3706069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |