| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 42.0% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 42.0% | 337.1 / inf | 317 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (105/79); new base G (126/7); total (231/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.95e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.33e-02 | |||||||||||
Only 100 of 325 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 | ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:3759203/100‑1 (MQ=255) tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:75385/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3288729/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1244446/100‑1 (MQ=255) atgtcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2490062/96‑3 (MQ=25) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2704199/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2585685/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa < 2:846729/100‑1 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:2433928/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:981849/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:319880/1‑100 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGCGTATACCGATTATTGACAACGTGCGCATTGTATATACAGGATCAGTCATTAACGCCTTATCCGGACTAC‑aaact > 1:2932332/1‑98 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:1343124/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:152041/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1629355/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:2262787/99‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3809608/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:2648129/1‑100 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCCCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3082814/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 2:1976629/1‑100 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:2374408/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:1348426/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2267071/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:3086021/1‑100 (MQ=255) caGCGCCACCGGGTATACAGTTTGTTGACAAAGTGCGATTTGGTTATGCCGGATGTAACGATCACGCATTATCCGGCGTAC‑TAAAACCTGCaaa > 1:630445/1‑94 (MQ=16) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:2841549/1‑100 (MQ=255) cttataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑Gaa < 2:1386819/98‑1 (MQ=255) tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCCGATTCGGCGTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAGATTCAATACATTG‑C‑‑A‑GAAt‑t > 1:1484584/1‑100 (MQ=18) ataCAGATGGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAt‑t‑‑‑t < 1:341159/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAt‑t‑‑‑tt > 2:1726913/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAt‑t‑‑‑tt > 1:1074708/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTc > 2:1940308/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCg < 2:2995149/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAgg > 2:340911/1‑100 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTGACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg < 1:2210155/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg < 2:1470226/100‑1 (MQ=255) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 1:938256/1‑100 (MQ=255) aaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 2:1834330/3‑100 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa < 2:2157709/100‑1 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa < 2:222977/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGc < 1:1976622/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTA‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGc < 1:2470434/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa > 2:4046874/1‑100 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa < 2:2691949/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc < 1:2371245/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc < 2:2176125/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgcg > 2:2748548/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCa > 1:737346/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc < 2:3531107/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc < 1:1690462/100‑1 (MQ=255) gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CCAT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTG‑C‑‑A‑GGAT‑A‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAg > 2:2582802/5‑100 (MQ=18) gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTG‑‑ATGCAT‑C‑‑‑CT‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:515598/5‑100 (MQ=18) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2044987/4‑100 (MQ=21) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GAAA‑A‑‑‑T‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3145920/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAgg > 1:3266858/1‑100 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑C‑‑A‑GAAA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3205087/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:2096103/3‑100 (MQ=21) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGGAC‑T‑‑‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:3792127/3‑100 (MQ=18) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2898305/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:693336/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:4283658/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GAGT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2322936/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTG‑C‑‑A‑ATCT‑T‑‑‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGCa > 1:1574412/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑‑‑AAT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1218092/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑C‑‑A‑GAGA‑T‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4098772/2‑100 (MQ=11) ggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GAAA‑A‑‑‑T‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:3562998/2‑98 (MQ=21) gtcggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑C‑‑A‑GGAA‑C‑‑‑GATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3266383/10‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAG‑C‑‑‑CACGTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17) gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3517417/1‑99 (MQ=17) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1376719/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1177795/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑C‑‑A‑TGGG‑C‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:1252887/9‑98 (MQ=17) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GAGT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:457522/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:4384513/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 2:3873554/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:3641854/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTG‑C‑‑A‑AGAT‑T‑‑‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 2:4129596/9‑98 (MQ=17) ccGGATAAGGCGGTCACTCCGCATCCGACCTAC‑‑AAATCATGCAAATCCAAAATATTG‑C‑‑A‑GGAG‑G‑‑‑TATGTATGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:4302543/1‑99 (MQ=18) cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAAT‑CC‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 2:2420656/8‑99 (MQ=21) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGGAC‑T‑‑‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGCagct > 2:4234326/8‑97 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GAGT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3355097/7‑100 (MQ=17) ggataaggcgTTCGCGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAG‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt < 1:4048973/94‑1 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2287956/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3852956/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3330045/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3937798/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCACTTAAATTCAATATATTG‑C‑‑A‑CCAT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 1:2987483/7‑99 (MQ=21) ggataaggcgGTTACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑A‑ATCT‑C‑‑‑CGTGTAGGCATGATAAGCGTAGCGAATCAGGccat > 1:4190648/7‑95 (MQ=17) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:923938/100‑1 (MQ=255) taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:1881978/4‑98 (MQ=18) taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:3555881/4‑100 (MQ=18) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:4160287/1‑100 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAA‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2797649/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttttttttt > 1:1803177/1‑95 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:3746961/99‑1 (MQ=255) cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:1301512/1‑100 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAtacaag > 2:1050057/1‑95 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:209480/100‑1 (MQ=255) | TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |