| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,985 | T→C | 42.0% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,985 | 0 | T | C | 42.0% | 287.0 / inf | 317 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (105/79); new base C (126/7); total (231/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.95e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.24e-04 | |||||||||||
Only 100 of 323 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 | tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:75385/1‑100 (MQ=255)tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt < 1:2929442/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCGGAGGCACAGCGCCACGGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:2363313/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3288729/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:1244450/1‑100 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1244446/100‑1 (MQ=255) gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2237018/100‑2 (MQ=37) aTGGCGCTGCACGCAGTGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2171244/100‑3 (MQ=25) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2585685/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2704199/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGTATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3638596/1‑100 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a > 1:3143893/1‑100 (MQ=255) cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa < 2:846729/100‑1 (MQ=255) atGCACGCAGAGGCACAGCGCCCCCGGGTATAGAGGTTGTTGACAAAGGGCGCTTTGTTTATGACGGATTCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa > 1:3377083/2‑100 (MQ=21) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:1343124/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:152041/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 2:3239664/1‑100 (MQ=255) cgatctggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:556371/94‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:3185546/1‑100 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCATg > 1:3846442/1‑100 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1161768/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1562290/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:1373877/100‑1 (MQ=255) cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCCCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3082814/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2267071/1‑100 (MQ=255) caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:1412288/100‑1 (MQ=255) gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:2606558/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAt‑ttt > 1:1074708/1‑100 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCg < 1:3501177/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCg < 2:2995149/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAggac > 1:2389369/1‑98 (MQ=255) gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGa > 1:3744466/1‑100 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGc < 1:1976622/100‑1 (MQ=255) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTA‑CA‑GAAT‑TTTCGTAGGCCTGATAAGc < 1:2470434/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCgg < 1:2205020/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCa > 1:26943/1‑100 (MQ=255) tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCAt > 2:3772392/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc < 2:1791456/100‑1 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc < 1:1690462/100‑1 (MQ=255) tgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 2:2264423/6‑99 (MQ=17) gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:1889616/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATGCAATACATTG‑CA‑GAAG‑TTTCGTAGACCTGATAAGCGGAGCGCATCAg > 1:2980673/5‑100 (MQ=18) gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTGATGCAT‑CCT‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:515598/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1483394/4‑100 (MQ=17) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GAGA‑TTATGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2553222/4‑100 (MQ=17) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAgg > 1:3266774/1‑100 (MQ=255) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAgg < 1:3801484/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAAGCGTGCAAATTCAATACATTG‑CA‑TGGG‑CCATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:4033404/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1713708/3‑100 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:3792127/3‑100 (MQ=18) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:1966884/100‑1 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2898305/1‑100 (MQ=255) ggctggataaggcgTTCACGCCGCATCCAGCCTAC‑AAAATTGTGCAAAATCAATGGATTG‑CA‑CAGC‑TAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2329378/11‑100 (MQ=25) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:4283658/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:693336/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCACTATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:732366/2‑100 (MQ=17) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:966751/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTG‑CA‑ATCT‑TCTGGTAGGCCTGATAAGCATCGCGCATCAGGCa > 1:1574412/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑CA‑GAGA‑TTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4098772/2‑100 (MQ=11) ggCCGGATAAGGCGTTCACGCCGCATGCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTG‑AT‑CGAT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2679109/2‑100 (MQ=21) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GGCT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2075891/2‑100 (MQ=18) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGCa > 2:2470596/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt < 2:3083076/100‑1 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 2:2747060/1‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TGAG‑CCACGTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TGAG‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3151441/1‑99 (MQ=17) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CCAT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:2803502/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTG‑CA‑GGAG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2227271/1‑99 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1177795/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1376719/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:457522/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:4384513/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GTTT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 2:3873554/9‑98 (MQ=25) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTG‑CA‑AGAT‑TTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 2:4129596/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTG‑CA‑GAGA‑TCATGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:4052065/9‑98 (MQ=14) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 2:1286656/9‑100 (MQ=18) ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:1279166/1‑100 (MQ=21) ccGGATAAGGCGGTCACTCCGCATCCGACCTAC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GGAG‑GTATGTATGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:4302543/1‑99 (MQ=18) cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑CAGGGAC‑TAT‑GTAGGCCTGATAAGCATAGCGCATCAGGCagct > 2:4234326/8‑97 (MQ=18) cggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt > 2:2418941/8‑100 (MQ=18) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:3501717/7‑98 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3355097/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2287956/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3937798/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑CA‑GGAC‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1778834/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTG‑TG‑GGCT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3320088/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑CAGGAAC‑GAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:2121114/7‑96 (MQ=25) ggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:1042106/7‑100 (MQ=18) ggataaggcgGTTACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑CA‑ATCT‑CCGTGTAGGCATGATAAGCGTAGCGAATCAGGccat > 1:4190648/7‑95 (MQ=17) aTGCGGCGTTAACGCCTTATCCTGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑TA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:802814/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:923938/100‑1 (MQ=255) taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:3555881/4‑100 (MQ=18) tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2022169/1‑100 (MQ=255) gcggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1834323/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:4160287/1‑100 (MQ=255) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 2:3556852/100‑1 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:3395845/1‑100 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:209480/100‑1 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |