| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,377,792 | A→T | 16.4% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,377,792 | 0 | A | T | 16.4% | 508.8 / 88.5 | 207 | intergenic (‑70/+19) | blc/ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| Reads supporting (aligned to +/- strand): ref base A (93/80); new base T (10/24); total (103/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-02 | |||||||||||
Only 100 of 213 total aligned reads displayed.
CGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGAT > NC_000913/4377693‑4377891 | cGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGaaaa < 1:699746/100‑1 (MQ=255) gCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAAt > 1:598558/1‑100 (MQ=255) gCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAAt > 2:280727/1‑100 (MQ=255) cTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAAtt < 2:1510817/100‑1 (MQ=255) tGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTc < 1:1487296/100‑1 (MQ=255) cGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCgg > 1:4366256/1‑100 (MQ=255) ggCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGa > 2:2849416/1‑100 (MQ=255) cAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGAcc > 2:1168066/1‑100 (MQ=255) cAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGAcc < 2:2870544/100‑1 (MQ=255) aaCGAGAGGGGGCAGGCGCATAAATGTTTCCTTGCTGG‑TTTTTTTCTAAGTGTGGATGACAGCAAGGAAGAGCGGGGAAAGGGTCCGAAGTTTCGGAcct < 1:1030902/100‑2 (MQ=255) aaCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcct < 1:232539/100‑2 (MQ=255) aaCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcct < 1:2640247/100‑2 (MQ=255) aaCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcct < 2:662811/100‑2 (MQ=255) aaCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGAccc > 2:395486/1‑100 (MQ=255) aCGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAcctt < 2:2886402/100‑3 (MQ=255) cGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAccttt < 2:2652641/100‑4 (MQ=255) cGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGa > 1:1735195/1‑100 (MQ=255) cGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGa > 2:2695132/1‑100 (MQ=255) agagGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAccttttc > 1:1612376/1‑95 (MQ=255) gagGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATgg > 1:4341770/1‑100 (MQ=255) gagGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATAACAGCCAGGAAAAGCGTAGAAAAGGTCCGAAAATTAGGAACCGa > 1:3823492/1‑97 (MQ=255) agGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAccttttctc < 1:3163439/100‑8 (MQ=255) gggAGCAGGCGCATAAATGTTTCCTTGCTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAccttttctc < 2:3789448/99‑8 (MQ=38) gggAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAATTTTCGGAccttttctcc < 1:2676356/100‑9 (MQ=38) gggAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGaa > 2:4262854/1‑100 (MQ=255) gggAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGaa > 2:974970/1‑100 (MQ=255) ggAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAAt > 2:3566907/1‑100 (MQ=255) gAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGACAAGCGGAGAAAAAGACCGAAAATTCGGACCCGATGGAAtt > 1:1340101/1‑100 (MQ=255) gCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAAtttt < 2:1096099/100‑1 (MQ=255) aGGCGGATAAATGTTTCCTTACGGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGTCCCGATGGAATTTTAc < 2:3087179/100‑1 (MQ=255) aGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAATGCGGAGAAAATGTCCGAAAATTCGGACCGGATGGAAttttgc < 2:2981305/100‑3 (MQ=255) aGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTAc < 2:1634940/100‑1 (MQ=255) ggCGCATAAATGTTTCCTTACTGG‑TTTTTTTTTTTTTTTTGATGACAGCAAGGAAAAGCTGAGTAAAGGTCGGAAAATTCGGACCCGATGGAATTTTACt > 1:2460951/1‑100 (MQ=255) ggCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACt > 1:939192/1‑100 (MQ=255) ggCGCATAAATGTTTCCTTACTGG‑TTTTTGTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTAc < 1:2838059/99‑1 (MQ=255) gcgcATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTg < 1:2426719/100‑1 (MQ=255) gcgcATAAATGTTTCCTGACTGG‑TTTTTTTCTAAGTGTAGAAGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGATCCGATGGAATTTTACTg < 1:1819275/100‑1 (MQ=255) cgcATAAATGTTTCCTTACTGGTTTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGGCCCGATGGAATTTTACTg < 1:3210344/100‑1 (MQ=255) cgcATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGt < 2:2334073/100‑1 (MQ=255) gcATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATCTCGGCGATCGCCGGCTCATTAAAAGTCAGAAAATTCGGACCCGATGGAATTTTACTGTa > 1:1561038/1‑100 (MQ=255) cATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTa > 1:1757732/1‑99 (MQ=255) tAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTagag < 2:2019728/100‑1 (MQ=255) aaaTGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGc < 2:4412737/100‑1 (MQ=255) aaaTGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGc < 1:2011156/100‑1 (MQ=255) ttttCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTa < 1:879531/99‑1 (MQ=255) cTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAAt > 2:488029/1‑100 (MQ=255) cTTACTGG‑TTTTTTTCTAAGTGTAGATCACAGCTAGGAAAGAAGGAGTAAAGGTCAGAAAATTCGGCCTCGATGGGATCTTACAGTATAGCGTTaaaga > 1:3992965/1‑96 (MQ=255) ttACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATc < 1:2582678/100‑1 (MQ=255) tACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCt > 2:1024955/1‑100 (MQ=255) cTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTg > 1:1658103/1‑99 (MQ=255) cTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGc < 2:822862/100‑1 (MQ=255) ttccgatctttCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGc < 2:2453132/92‑1 (MQ=255) g‑TTTTTTGCTAAGGGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAg < 1:3935893/100‑1 (MQ=255) tttttttCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGATCCGAAAATTCGGACACGATGGAATTTTACTGTAGAGCGTTAAGAATATGc > 1:2521982/1‑96 (MQ=255) tttCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAggcggc > 2:3543585/1‑100 (MQ=255) tCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTACCACGCGGCGt > 2:1583924/1‑100 (MQ=255) cTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTc < 2:3443311/100‑1 (MQ=255) cTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTc < 2:967140/100‑1 (MQ=255) tAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCg < 1:3795491/100‑1 (MQ=255) tgtAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGActc < 2:943260/100‑1 (MQ=255) gtAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGACGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGActct < 2:2115643/100‑1 (MQ=255) tAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACtctc > 2:1693597/1‑100 (MQ=255) tAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACtctc < 2:468184/100‑1 (MQ=255) aGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCg < 2:193612/100‑1 (MQ=255) aTGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGACTCTGCCAGGCCGCGTCGACTCTCGc > 2:4338440/1‑99 (MQ=255) tGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTATCGCTg > 1:338340/1‑100 (MQ=255) aCAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGa > 1:1221529/1‑100 (MQ=255) cAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGAt > 1:420097/1‑100 (MQ=255) gCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACCGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGAATg > 1:3726339/1‑100 (MQ=255) cAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTgg > 1:3417036/1‑100 (MQ=255) cAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTgg > 1:335716/1‑100 (MQ=255) aaGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTggg < 1:3595739/100‑1 (MQ=255) aGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGa < 1:407701/100‑1 (MQ=255) aGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTGACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGa < 2:4104541/100‑1 (MQ=255) ggAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGAt > 2:1376925/1‑100 (MQ=255) ggAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGAt > 2:4361341/1‑100 (MQ=255) aGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGttt > 2:4232535/1‑100 (MQ=255) ggAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttg < 1:1142193/100‑1 (MQ=255) ggAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttg < 1:2860384/100‑1 (MQ=255) tccatcgggTCCGAATTTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGACAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgt > 2:3241386/8‑100 (MQ=255) gagaAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgt < 2:1757739/100‑1 (MQ=255) agaAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgtt > 2:2554706/1‑100 (MQ=255) agaAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgt < 2:2717032/99‑1 (MQ=255) atcgggTCCGAATTTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTTTCGCTGGATTGGGATAGTTtttgttt > 2:4139196/5‑99 (MQ=255) aaaaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgtttg < 2:878140/100‑1 (MQ=255) aaaaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgttt < 1:4318767/99‑1 (MQ=255) aaaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTtttgtttg < 1:3750131/99‑1 (MQ=255) aaaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGc > 2:2497447/1‑100 (MQ=255) aaGGTCCGAAAATTCGGGCCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGcc < 2:3598091/100‑1 (MQ=255) aaGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGcc < 1:3459446/100‑1 (MQ=255) gggTCCGAATTTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCa > 1:4282307/2‑100 (MQ=255) gggTCCGAATTTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCa > 2:4172198/2‑100 (MQ=255) ggTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAg < 2:1235498/100‑1 (MQ=255) tCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCa > 2:906651/1‑100 (MQ=255) cGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATc > 1:647916/1‑100 (MQ=255) cGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATc > 1:3443218/1‑100 (MQ=255) gAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCa > 1:522467/1‑100 (MQ=255) gAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCa > 1:2239431/1‑100 (MQ=255) aaaaTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCAc < 2:2947674/100‑1 (MQ=255) aaaTTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACg < 1:2990274/100‑1 (MQ=255) | CGCTGCGGCAACGAGAGGGAGCAGGCGCATAAATGTTTCCTTACTGG‑TTTTTTTCTAAGTGTAGATGACAGCAAGGAAAAGCGGAGAAAAGGTCCGAAAATTCGGACCCGATGGAATTTTACTGTAGAGCGTTAAGAATCTGCCAGGCGGCGTCGACTCTCGCTGGATTGGGATAGTTTTTGTTTGCCAGCATCACGAT > NC_000913/4377693‑4377891 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |