Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 569,161 A→C 16.6% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913569,1610AC16.6% 462.4 / 80.8 194D87A (GAC→GCC) ybcKDLP12 prophage; putative recombinase
Reads supporting (aligned to +/- strand):  ref base A (77/82);  new base C (22/11);  total (101/93)
Fisher's exact test for biased strand distribution p-value = 8.39e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01

Only 100 of 198 total aligned reads displayed.

AAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGTCTA  >  NC_000913/569062‑569260
                                                                                                   |                                                                                                   
aaGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGa                                                                                                     >  2:137871/1‑100 (MQ=255)
 aGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGAc                                                                                                    <  2:4319303/100‑1 (MQ=255)
  ggAAAGCATGCACAATCAGGAGCTTTTTTTTTTTTTTTTTATGCTATAGAACATGGTTATATATTGCCAGGTACTACATTGTTAGTTGAAAGTCTGTACa                                                                                                   >  1:1977751/1‑100 (MQ=255)
    aaaGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGa                                                                                                 <  2:391978/100‑1 (MQ=255)
      aGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGTCCAGACt                                                                                               <  1:2818976/100‑1 (MQ=255)
       gCATGCACAATAAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACtt                                                                                              >  2:3730006/1‑100 (MQ=255)
         aTGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTc                                                                                            <  1:1290813/100‑1 (MQ=255)
         aTGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTc                                                                                            >  1:1999792/1‑100 (MQ=255)
          tGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCa                                                                                           <  1:3222923/100‑1 (MQ=255)
            cacaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGTCCAGACTTTCaac                                                                                         <  2:1605572/100‑2 (MQ=255)
            cacaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGTCCAGACTTTCaac                                                                                         <  2:1710342/100‑2 (MQ=255)
            cacaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGTCCAGACTTTCaac                                                                                         <  2:4306270/100‑2 (MQ=255)
            cacaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGTCCAGACTTTCaac                                                                                         <  2:647026/100‑2 (MQ=255)
            cacaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGTCCAGACTTTCaac                                                                                         <  1:1421537/100‑2 (MQ=255)
            cacaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAag                                                                                         <  1:3591178/100‑1 (MQ=255)
             acaagtaGGAGCTTTTTCGGAATTTTTAAATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAaga                                                                                        <  1:2599009/94‑1 (MQ=255)
             acaATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAaga                                                                                        <  1:3056774/100‑1 (MQ=255)
              caATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAagag                                                                                       >  2:1483745/1‑100 (MQ=255)
               aaTCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAgaga                                                                                      <  2:82366/100‑1 (MQ=255)
                   aGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGaaaaa                                                                                  >  2:4188062/1‑100 (MQ=255)
                    ggAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAg                                                                                 >  1:265383/1‑100 (MQ=255)
                    ggAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAg                                                                                 >  1:547885/1‑100 (MQ=255)
                      aGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTc                                                                               <  2:568546/100‑1 (MQ=255)
                        cTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCgg                                                                             <  2:618469/100‑1 (MQ=255)
                         tttttCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGt                                                                            <  2:3515611/100‑1 (MQ=255)
                         tttttCGGAATTTTTAGATGCTATAGAGCATGATTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGt                                                                            <  1:3237590/100‑1 (MQ=255)
                          ttttCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTg                                                                           <  2:3279220/100‑1 (MQ=255)
                           tttCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGa                                                                          <  2:2005503/100‑1 (MQ=255)
                           tttCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGa                                                                          >  2:3829125/1‑100 (MQ=255)
                           tttCGGAATTTTTAGATACTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGATGAAATTCTGAACAGAGTTTCAAGAGAAAAAGTCGGTg                                                                           >  1:1057109/1‑99 (MQ=255)
                              cGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGc                                                                       >  2:1918058/1‑100 (MQ=255)
                              cGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGc                                                                       <  2:4386835/100‑1 (MQ=255)
                              cGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGc                                                                       >  2:2448699/1‑100 (MQ=255)
                               ggAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCg                                                                      <  2:1400026/100‑1 (MQ=255)
                               ggAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCg                                                                      <  2:1004789/100‑1 (MQ=255)
                                gAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGa                                                                     <  2:1344404/100‑1 (MQ=255)
                                gAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGa                                                                     >  1:118858/1‑100 (MQ=255)
                                 aaTTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGAt                                                                    <  2:3600256/100‑1 (MQ=255)
                                 aaTTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGAt                                                                    >  2:3072936/1‑100 (MQ=255)
                                 aaTGTTTAGATGCTATAGAGTATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGAt                                                                    <  2:3088542/100‑1 (MQ=255)
                                  aTTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGAtt                                                                   >  2:3363471/1‑100 (MQ=255)
                                   tttttAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTg                                                                  >  2:1168967/1‑100 (MQ=255)
                                       tAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACg                                                              <  1:79655/100‑1 (MQ=255)
                                         gATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACg                                                              <  1:1903176/98‑1 (MQ=255)
                                         gATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGtn                                                            <  2:2119276/100‑2 (MQ=255)
                                         gATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTc                                                            <  2:2745519/100‑1 (MQ=255)
                                          aTGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCt                                                           <  1:713150/100‑1 (MQ=255)
                                          aTGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCt                                                           <  1:1841467/100‑1 (MQ=255)
                                            gCTCTAGAGCATGGTTATATATTGCCAGGAACTCCACTGTTAGTTGAAAGTCTGGACAGACTTTAAAGAGAAAAAGTCGGTGAAGCGATGGAACGtgtg                                                          >  1:2539315/1‑99 (MQ=255)
                                            gCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGa                                                         >  1:924866/1‑100 (MQ=255)
                                              tataGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGaaa                                                       >  2:626871/1‑100 (MQ=255)
                                              tataGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGaaa                                                       >  2:633109/1‑100 (MQ=255)
                                                       tGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTg                                              <  2:3492865/100‑1 (MQ=255)
                                                       tGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTg                                              <  2:3970624/100‑1 (MQ=255)
                                                             tatatTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCAc                                        <  2:898231/100‑1 (MQ=255)
                                                              atatTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACg                                       <  2:1179335/100‑1 (MQ=255)
                                                              atatTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACg                                       <  2:4120453/100‑1 (MQ=255)
                                                              atatTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACg                                       <  1:1150695/100‑1 (MQ=255)
                                                               tatTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACgg                                      <  1:137871/100‑1 (MQ=255)
                                                               tatTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACgg                                      >  1:471133/1‑100 (MQ=255)
                                                                   gCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTAtt                                  >  1:2282952/1‑100 (MQ=255)
                                                                    ccAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTg                                 >  2:4258922/1‑100 (MQ=255)
                                                                      aGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGAt                               >  2:1276803/1‑100 (MQ=255)
                                                                      aGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGAt                               <  2:2583150/100‑1 (MQ=255)
                                                                       ggAACTACATTGTTAGTTGAAAGTCTGGCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATg                              >  1:2755951/1‑100 (MQ=255)
                                                                           cTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTtat                          <  2:3407991/100‑1 (MQ=255)
                                                                           cTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTtat                          <  1:4277708/100‑1 (MQ=255)
                                                                            tACATTGTGAGTGGAAAGTCTGGACAGTCTTTCGAGAGAAAATGTGGGGGAATCGATTGAACGTCTGAAAGTGATGGTGGAGCACGGTATTGATGTtata                         >  1:1466507/1‑100 (MQ=255)
                                                                             aCATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATaa                        >  2:2037788/1‑100 (MQ=255)
                                                                               nttGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAAct                      >  1:3840856/2‑100 (MQ=255)
                                                                                ttttctcttGAAAGTCAGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGAGATTGAACGTTTGAAATTAATTTTGAATCACGGTATGGATGTTAAAAc                       >  1:78512/8‑98 (MQ=25)
                                                                                 tGTTAGTTGAAAGTCTGGATAGACTTTCTAGAGAAAAAGTTGGTGAAGCGATTGAACTTCTGAAATTGATTTTGGATAACGGTATTGATGTTATaa                        >  1:818834/1‑96 (MQ=255)
                                                                                  ttctcttGAAAGTATGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCtt                   >  1:2725803/6‑100 (MQ=38)
                                                                                  gTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCtt                   >  2:2959869/1‑100 (MQ=255)
                                                                                     tcttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGc                >  2:3443317/3‑100 (MQ=255)
                                                                                     aGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGc                <  1:3306608/100‑1 (MQ=255)
                                                                                     aGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGc                <  2:1400619/100‑1 (MQ=255)
                                                                                      gTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCg               >  2:2292069/1‑100 (MQ=255)
                                                                                      gTTGAAAGTCTGGAAAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATAGAACGTCTGAAATTAATTTTGAATCAAGGTATTAATGTTATAActatatg                 >  1:3803755/1‑93 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCttt                  >  1:2330116/2‑97 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGc                >  1:4370283/2‑99 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCg               >  2:4410185/2‑100 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCg               >  1:3552526/2‑100 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCg               >  1:662179/2‑100 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCg               >  2:4092345/2‑100 (MQ=255)
                                                                                      cttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCAAGGTATTGATGTTATAACTCTTTGCg               >  1:1081709/2‑100 (MQ=255)
                                                                                       ttGAAAGTCTGTCCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGa              >  2:576275/1‑100 (MQ=255)
                                                                                        tGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGAc             >  2:4024383/1‑100 (MQ=255)
                                                                                        tGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGAc             <  2:3624750/100‑1 (MQ=255)
                                                                                        tGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGAc             <  2:54624/100‑1 (MQ=255)
                                                                                        tGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGAc             <  1:1805568/100‑1 (MQ=255)
                                                                                        tGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGAc             >  2:3173642/1‑100 (MQ=255)
                                                                                         gAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACa            <  2:2838822/100‑1 (MQ=255)
                                                                                           aaGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAAt          >  1:4063482/1‑100 (MQ=255)
                                                                                                tGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGt     >  2:254511/1‑100 (MQ=255)
                                                                                                 ggACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGt     >  1:3628657/1‑99 (MQ=255)
                                                                                                 ggACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGTc    >  1:2635732/1‑100 (MQ=255)
                                                                                                 ggACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGTc    <  1:3914675/100‑1 (MQ=255)
                                                                                                 ggACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGTc    <  1:1636184/100‑1 (MQ=255)
                                                                                                   aCAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGTCta  <  2:1417400/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AAGGAAAGCATGCACAATCAGGAGCTTTTTCGGAATTTTTAGATGCTATAGAGCATGGTTATATATTGCCAGGAACTACATTGTTAGTTGAAAGTCTGGACAGACTTTCAAGAGAAAAAGTCGGTGAAGCGATTGAACGTCTGAAATTGATTTTGAATCACGGTATTGATGTTATAACTCTTTGCGACAATACAGTCTA  >  NC_000913/569062‑569260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: