| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,004,741 | T→G | 15.3% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,004,741 | 0 | T | G | 15.3% | 386.8 / 66.3 | 162 | intergenic (+84/‑27) | ycbF/pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| Reads supporting (aligned to +/- strand): ref base T (53/84); new base G (14/11); total (67/95) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.50e-02 | |||||||||||
Only 100 of 175 total aligned reads displayed.
GCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTCAGC > NC_000913/1004642‑1004840 | cAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGttt < 2:1991692/100‑1 (MQ=255) cAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGttt < 1:744473/100‑1 (MQ=255) aaaaTCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑GTTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGttt > 2:1231686/1‑100 (MQ=255) aaaaTCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGttt > 2:3555602/1‑99 (MQ=255) aaaTCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGc < 2:3384172/100‑1 (MQ=255) aaaTCTGCCCCGAAACAGGTTCGGAAAACGTTTGCGG‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGttt < 1:1295220/99‑1 (MQ=255) aaTCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGca < 2:588157/100‑1 (MQ=255) aTCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGTTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGcac > 1:1708715/1‑100 (MQ=255) aTCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGc < 2:2633089/98‑1 (MQ=255) cTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑‑TTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACAcc < 2:1046012/100‑1 (MQ=255) gCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCg > 1:2424377/1‑100 (MQ=255) cccTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTTTTTTTTTTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCacac > 1:2176001/1‑97 (MQ=255) cccTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTGTGCAAACCgg > 1:1912734/1‑100 (MQ=255) ccTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCggg > 1:66654/1‑100 (MQ=255) ccTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCggg < 1:1021928/100‑1 (MQ=255) tGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCgg < 1:1298459/97‑1 (MQ=255) gAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTGTGCAAACCgggggc < 2:88973/100‑4 (MQ=255) aaaCAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTGTGCAAACCgggggcg < 2:1912741/100‑5 (MQ=255) aaaCAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTGTGCAAACCgggggcg < 1:1367596/100‑5 (MQ=255) aaCAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGGAGGTCAATTTCCTTTGGGTCCGAACGCGCACATAATACGCCCCCGGTGTGCAAACCgggggc < 1:1833316/98‑4 (MQ=255) cAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCGCCCGGTTTGCACACCGGGAATCCAg > 1:1601590/1‑100 (MQ=255) cAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAg < 2:1964070/100‑1 (MQ=255) gTTCGGAAAACGTTTGC‑G‑TTTTTTTTTTTTTTTTTTAATTCCCTTTTGGCCCGAACTCTCACATATTACGCCCCCGGTTTGCCCACCGGGAATc > 1:3480473/1‑94 (MQ=255) gTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGgag < 2:2540763/100‑1 (MQ=255) gTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGgag < 1:1489290/100‑1 (MQ=255) ttCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGgaga > 2:1128202/1‑100 (MQ=255) ttCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGgaga < 2:2965733/100‑1 (MQ=255) aaaaCGTTTGC‑G‑TTTTTTTTGCTGCAGGTCAATTACCTGTTGGTCCGAACTCTCACATAATACGCACCCGCTTTGCACACCGCGAATCCAGGAGCGTTCa > 1:2635616/1‑100 (MQ=255) aaaaCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCa < 2:1619840/100‑1 (MQ=255) aaaaCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCa < 1:4113126/100‑1 (MQ=255) aaaaCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCa < 2:3821404/100‑1 (MQ=255) aaaCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCAt > 2:1766678/1‑100 (MQ=255) aaCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATg < 1:1104252/100‑1 (MQ=255) aCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGTTCCCGGTTTGCACATCGGGAATCTATGAGAGTTTAttt < 1:360295/100‑3 (MQ=255) aCGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGt < 1:4299986/100‑1 (MQ=255) cGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGta < 1:3874104/100‑1 (MQ=255) cGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGta < 1:774086/100‑1 (MQ=255) tGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGtactac < 2:1541955/100‑1 (MQ=255) gC‑G‑TTTTTTTTTTTTCATGTTAATTCCATTTTGGTCCGAACTCGCACATAATATGCGCTCGGTTTTCACATCGGGAATCCAAGAGAGTTCATGttct > 1:2868408/1‑97 (MQ=255) gC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTAcc < 2:1296530/100‑1 (MQ=255) g‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTAcccc > 2:3768140/1‑100 (MQ=255) ttttttttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCt < 2:3150413/100‑1 (MQ=255) ttttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCttcgt > 2:2784993/1‑100 (MQ=255) ttttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCttcgt < 2:1572836/100‑1 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCttcgtt < 1:1425552/100‑1 (MQ=255) ccGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTa > 1:1444674/1‑100 (MQ=255) ccGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTa > 2:2612705/1‑100 (MQ=255) cGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTaa > 2:4272612/1‑100 (MQ=255) cGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTa > 1:1000090/1‑99 (MQ=255) gCAGGTCAATTCGCTTTTGGTCCGAACGCGCACATAATACGGCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCttcgttcg < 1:1942426/96‑1 (MQ=255) gCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTaaa > 1:4028642/1‑100 (MQ=255) ggTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGcc < 2:3599274/100‑1 (MQ=255) gTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGccc < 2:3919272/100‑1 (MQ=255) tCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCt < 2:2640407/100‑1 (MQ=255) aaTTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCttt > 2:84704/1‑100 (MQ=255) ttCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCtttt < 2:1331326/99‑1 (MQ=255) tCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCttttac < 2:2981200/100‑3 (MQ=255) cccTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCa > 1:1423283/1‑100 (MQ=255) cccTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCa < 1:1636083/100‑1 (MQ=255) cccTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCa < 2:1621897/100‑1 (MQ=255) ttttTGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCt < 1:1128198/100‑1 (MQ=255) ttttGGTCCGAACTCTCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCt < 2:4335878/100‑1 (MQ=255) tttGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTCCTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTc > 1:2326703/1‑100 (MQ=255) tttGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCt < 1:598104/99‑1 (MQ=255) ttGGTCCGAACTCGCGCATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCt < 2:2012554/98‑1 (MQ=255) tCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATcc < 2:2176008/100‑1 (MQ=255) tCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATcc < 2:3357057/100‑1 (MQ=255) tCCGAACTCGCACATAATACACCCCCGGTTTGCACACCGAGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATcc < 1:2934753/100‑1 (MQ=255) ccGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCa > 2:565730/1‑100 (MQ=255) ccGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCa < 2:3620569/100‑1 (MQ=255) cGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCag > 1:443908/1‑100 (MQ=255) gAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCaga > 2:247702/1‑100 (MQ=255) gAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCAAGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCaga < 2:20717/100‑1 (MQ=255) aaCTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCagag < 1:2808395/100‑1 (MQ=255) aaCTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCagag < 1:1360189/100‑1 (MQ=255) cGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAgcgcg < 1:4029216/100‑1 (MQ=255) cGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAgcgcg < 2:226027/100‑1 (MQ=255) gCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAgcgcgc < 1:804318/100‑1 (MQ=255) cacaTAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTACAGCCCTTTTCCAGCTCGATCCAgcgcgcgc > 1:3528811/1‑99 (MQ=255) cacaTAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCt > 1:328141/1‑100 (MQ=255) cacaTAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCATAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCt < 2:3737293/100‑1 (MQ=255) taataCGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATg < 2:507403/100‑1 (MQ=255) ataCGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAg > 2:1687735/1‑100 (MQ=255) tggattcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGt > 1:3775991/7‑100 (MQ=255) gattcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGttt > 2:4171246/5‑100 (MQ=255) gattcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGttt > 1:3973009/5‑100 (MQ=255) cGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGttt < 2:3663596/100‑1 (MQ=255) gCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTa > 2:3846962/1‑100 (MQ=255) attcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTa > 2:3693822/4‑100 (MQ=255) ttcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTAc > 2:2574627/3‑100 (MQ=255) ttcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTAATACCCCATCGTTCGTAAAGCCCTTTTCCAGCTAGATCCAGAGAGCGCTCATGCGtt > 1:3433922/3‑97 (MQ=255) cccccGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTAc > 2:2401428/1‑100 (MQ=255) tcccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGACCTTTTCCAGCTCGATCGAGGGCGCGCTCCTGAGTTTACt > 2:1667754/2‑100 (MQ=255) cccGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACtt > 2:2335909/1‑100 (MQ=255) cccGGTGTGCAAACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACtt > 1:694405/1‑100 (MQ=255) ggTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTc < 1:3754234/100‑1 (MQ=255) gTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTc < 1:1422687/99‑1 (MQ=255) tttGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTCAg < 2:3809582/100‑1 (MQ=255) tttGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTCAg < 2:2860559/100‑1 (MQ=255) ttGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTCAGc < 1:2310073/100‑1 (MQ=255) | GCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGC‑G‑TTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCATGTACTACCCCTTCGTTCGTAAAGCCCTTTTCCAGCTCGATCCAGAGCGCGCTCATGAGTTTACTTTTCAGC > NC_000913/1004642‑1004840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |