Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,211,612 A→T 17.1% intergenic (+35/+68) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,211,6120AT17.1% 404.6 / 68.3 157intergenic (+35/+68)icdC/iraMpseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
Reads supporting (aligned to +/- strand):  ref base A (74/56);  new base T (15/12);  total (89/68)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01

Only 100 of 172 total aligned reads displayed.

TGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTTATAA  >  NC_000913/1211513‑1211711
                                                                                                   |                                                                                                   
tGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGtata                                                                                                     >  1:3284102/1‑100 (MQ=255)
tGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGtata                                                                                                     >  1:6611/1‑100 (MQ=255)
  aTGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAac                                                                                                   <  1:265834/100‑1 (MQ=255)
  aTGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAac                                                                                                   >  1:4042372/1‑100 (MQ=255)
    ggAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAacac                                                                                                 >  1:299846/1‑100 (MQ=255)
      aaGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGc                                                                                               >  2:3798409/1‑100 (MQ=255)
       aGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGcc                                                                                              <  1:636580/100‑1 (MQ=255)
       aGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGcc                                                                                              <  2:3713458/100‑1 (MQ=255)
          gcgcaaGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgt                                                                                           <  1:1218386/96‑1 (MQ=25)
           gcTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgtt                                                                                          <  2:7824/100‑1 (MQ=25)
           gcTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgtt                                                                                          >  2:4029452/1‑100 (MQ=255)
            cTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttg                                                                                         <  2:3384702/100‑1 (MQ=255)
            cTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCgttg                                                                                         >  1:3566720/1‑100 (MQ=255)
                gctgctGAAATGTTCAGAGTTTGGTGAAGTGAGCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgtttcaan                                                                                     <  1:2323334/100‑6 (MQ=25)
                gctgctGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGtttt                                                                                     <  2:278566/100‑1 (MQ=255)
                  tgctgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgtttcaatat                                                                                   <  2:1621061/100‑8 (MQ=25)
                  tgctgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgtttcaatat                                                                                   <  2:1672389/100‑8 (MQ=25)
                  tgctgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttat                                                                                   <  2:1297209/100‑1 (MQ=255)
                   gctgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttatt                                                                                  <  1:4148807/100‑1 (MQ=255)
                   gctgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttatt                                                                                  <  1:3437688/100‑1 (MQ=255)
                   gctgAAATGTTCAGACTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttatt                                                                                  <  2:4343764/100‑1 (MQ=255)
                    ctgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttattt                                                                                 >  2:1550891/1‑100 (MQ=255)
                     tgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCgtttcaatattta                                                                                <  2:4402407/100‑11 (MQ=25)
                     tgAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTtttattta                                                                                >  1:3142043/1‑100 (MQ=255)
                      gAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTttatttat                                                                               >  2:147014/1‑100 (MQ=255)
                      gAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCATATAACACGCCCGTTGTTttatttat                                                                               >  1:4371888/1‑100 (MQ=255)
                           gTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGa                                                                          >  2:4016394/1‑100 (MQ=255)
                            ttCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGat                                                                         >  1:2423224/1‑100 (MQ=255)
                            ttCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGat                                                                         >  2:2387556/1‑100 (MQ=255)
                             tCAGAGTTTGGTGAAGCGATGATCGAAAACATGTACTCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGata                                                                        <  2:1252734/100‑1 (MQ=255)
                              nagagTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGatat                                                                       >  1:3230617/2‑100 (MQ=255)
                                  tcttGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt                                                                   <  2:4156697/98‑1 (MQ=255)
                                  gTTTGGTGAAGCTATCATCGAAAACATTTAATCTCTCCATGTGTTAAATATTGAAACGTGCATATAAAACGATCGTTGTTTTATTTATCTGGAtgttat                                                                    >  1:792541/1‑99 (MQ=255)
                                  gTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt                                                                   >  2:3197792/1‑100 (MQ=255)
                                  gTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATattatt                                                                   >  1:1264421/1‑100 (MQ=255)
                                   tttGGTGAAGCGATCATCGAAAACATTTAATCGCTCCATGTGTTAAATATGGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATAttatta                                                                  <  2:367400/100‑1 (MQ=255)
                                   tttGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATAttatta                                                                  <  2:106786/100‑1 (MQ=255)
                                        tGAAGCGATCATCGAAAACATGTAATCTCTTCATGTGTTAAATATTGAAACGAGCGTATAACACGCCCGGTGTTTTATTTATGTGGATATAATTAATAGc                                                             >  1:2198085/1‑100 (MQ=255)
                                         gAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCa                                                            >  1:2367032/1‑100 (MQ=255)
                                            gCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCatat                                                         >  2:2808668/1‑100 (MQ=255)
                                             cGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATc                                                        >  2:2453772/1‑100 (MQ=255)
                                              gATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCg                                                       >  2:3375726/1‑100 (MQ=255)
                                                tcatcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAg                                                     <  2:6611/100‑1 (MQ=255)
                                                tcatcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAg                                                     <  1:1756743/100‑1 (MQ=255)
                                                 catcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGc                                                    <  1:4293357/100‑1 (MQ=255)
                                                  atcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCa                                                   >  2:3493899/1‑100 (MQ=255)
                                                   tcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCat                                                  >  2:386589/1‑100 (MQ=255)
                                                   tcGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCat                                                  >  2:2858581/1‑100 (MQ=255)
                                                      aaaaCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATAtt                                               >  1:216300/1‑100 (MQ=255)
                                                      aaaaCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATAtt                                               <  2:1010853/100‑1 (MQ=255)
                                                      aaaaCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGGTGTTGTATTTATGTGGATATTATTAATAGCATATCGAGCatat                                                >  2:1101173/1‑99 (MQ=255)
                                                       aaaCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATAttt                                              <  2:410284/100‑1 (MQ=255)
                                                         aCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTta                                             <  2:1417883/99‑1 (MQ=255)
                                                                     tcCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCAtt                                <  2:3824453/100‑1 (MQ=255)
                                                                          gtgtTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTg                           <  2:4230619/100‑1 (MQ=255)
                                                                          gtgtTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTg                           <  2:119543/100‑1 (MQ=255)
                                                                            gtTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAg                         <  2:2049474/100‑1 (MQ=255)
                                                                            gtTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAg                         >  1:1502061/1‑100 (MQ=255)
                                                                            gtTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAg                         >  2:134028/1‑100 (MQ=255)
                                                                             ttAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGc                        <  2:1458003/100‑1 (MQ=255)
                                                                              tAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGcc                       <  2:2097845/100‑1 (MQ=255)
                                                                               aaaTATCGAACCGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTCAGc                        <  1:3247368/98‑1 (MQ=255)
                                                                                aaTATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCa                     >  2:1218709/1‑100 (MQ=255)
                                                                                  tatTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCata                   >  1:4264074/1‑100 (MQ=255)
                                                                                  taaaacaaCGGGCGTGTTATACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCata                   >  2:3583969/7‑100 (MQ=38)
                                                                                    ttGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATg                 >  1:3723303/1‑100 (MQ=255)
                                                                                    aaacaaCGGGCGTGTTATACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATg                 >  2:2490693/5‑100 (MQ=38)
                                                                                     tGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATgg                >  2:78503/1‑100 (MQ=255)
                                                                                     tGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATgg                >  2:924351/1‑100 (MQ=255)
                                                                                     tGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATgg                >  1:2438729/1‑100 (MQ=255)
                                                                                     tGAAACGGGCGTATAACACGCCCGTTGTTTTATTCATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAACACATTACTTGAGCCAATATg                 >  1:1008021/1‑99 (MQ=255)
                                                                                     tGAAACGGGCGTATAACACGACCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCAAGCATATTCATCTGAAGACCATTACTTGAGCCCatat                  >  1:1007882/1‑98 (MQ=255)
                                                                                      gAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATggg               <  2:292075/100‑1 (MQ=255)
                                                                                       caaCGGGCGTGTTATACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGc              >  1:2068085/2‑100 (MQ=255)
                                                                                       aaaCGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATggg               >  1:1724979/1‑99 (MQ=255)
                                                                                       aaaCGGGCGTATAACACGCCCGTTGTTTTATTTATGCGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGc              >  2:3117624/1‑100 (MQ=255)
                                                                                        aaCGGGCGTGTTATACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCa             >  2:3028080/1‑100 (MQ=255)
                                                                                        aaCGGGCGTGTTATACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCa             >  1:983564/1‑100 (MQ=255)
                                                                                        aaCGGGCGTGTTATACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCa             >  2:1585818/1‑100 (MQ=255)
                                                                                        aaCGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCa             <  2:299847/100‑1 (MQ=255)
                                                                                         aCGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATGTTTATATGAAGCCCATTACTTGAGCCCATATGGGCat            >  2:1980572/1‑100 (MQ=255)
                                                                                          cGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCata           >  2:2917177/1‑100 (MQ=255)
                                                                                          cGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCat            >  1:264114/1‑99 (MQ=255)
                                                                                          cGGGCGTATAACACGCCCGTTGTTTAATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCata           >  1:25606/1‑100 (MQ=255)
                                                                                           gggCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCatat          >  2:3286807/1‑100 (MQ=255)
                                                                                            ggCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAtt         >  2:3830502/1‑100 (MQ=255)
                                                                                            ggCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAtt         >  2:2219391/1‑100 (MQ=255)
                                                                                              cGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAtttt       >  2:833317/1‑100 (MQ=255)
                                                                                              cGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAtttt       >  2:3173390/1‑100 (MQ=255)
                                                                                              cGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAtttt       >  1:3813694/1‑100 (MQ=255)
                                                                                               gTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGctcaagtaa      <  2:2797267/100‑9 (MQ=255)
                                                                                               gTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAttttt      <  1:388094/100‑1 (MQ=255)
                                                                                               gTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATAtttt       <  2:56073/99‑1 (MQ=255)
                                                                                                tataACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTta     <  2:3945769/100‑1 (MQ=255)
                                                                                                tataACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTta     >  2:3945458/1‑100 (MQ=255)
                                                                                                tataACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTta     >  2:2189000/1‑100 (MQ=255)
                                                                                                 ataACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTtat    >  1:1193009/1‑100 (MQ=255)
                                                                                                 ataACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTta     >  1:90417/1‑99 (MQ=255)
                                                                                                  taACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTtata   <  1:3510580/100‑1 (MQ=255)
                                                                                                   aaCACGCCCGTTGTTTTATTTATGTAGATATTATTATTAGCATATCGACCATATTTATATGAAGTCAATTACTTATGCCCATATGGGCATATTTATATaa  <  1:1647228/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TGATGGAAGGCGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTATAACACGCCCGTTGTTTTATTTATGTGGATATTATTAATAGCATATCGAGCATATTTATATGAAGCCCATTACTTGAGCCCATATGGGCATATTTTTATAA  >  NC_000913/1211513‑1211711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: