Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,246,073 C→T 100% G435D (GGC→GAC)  treA ← periplasmic trehalase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,246,0730CT99.3% 438.6 / ‑5.0 132G435D (GGC→GAC) treAperiplasmic trehalase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (68/63);  total (69/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01

Only 100 of 133 total aligned reads displayed.

TAGTTTTGTAATCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGCCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGGGCGGCCG  >  NC_000913/1245977‑1246169
                                                                                                |                                                                                                
    tttGTAATCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCggg                                                                                           <  2:1472023/100‑1 (MQ=255)
     ttGTAATCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGt                                                                                          <  1:275265/100‑1 (MQ=255)
     ttGTAATCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGt                                                                                          <  2:1903651/100‑1 (MQ=255)
         actCCTTCTGTCGCGTCCCCCCGTCACGCCGCCCAGCCATTTGGCGCTTCCCATTCTTGCCCACTTTTCCCCGACGTGGTGTTCAGGTCGCCGGGt                                                                                          <  1:4140407/94‑1 (MQ=255)
         aaTCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTgca                                                                                      >  2:1224196/1‑100 (MQ=255)
          aTCCTTCTGTCGCGACCCACTGTAACGGTGCTCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTgcag                                                                                     <  1:2979648/100‑1 (MQ=255)
          aTCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTgcag                                                                                     >  2:2501718/1‑100 (MQ=255)
           tCCTTCTGTCGCGACCCACTGTACCGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCACCCTTTTCACCGACGTGGTGTTCAGGTCGCCGGGttcaagc                                                                                    >  1:2373539/1‑95 (MQ=255)
           tCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTgcagc                                                                                    <  1:2459431/100‑1 (MQ=255)
            ccTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTgcagca                                                                                   >  2:2479617/1‑100 (MQ=255)
             cTTCTGTCGCGACCCACTGTAACGGTGCCCATCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGcagcag                                                                                  <  1:3500445/100‑1 (MQ=255)
             cTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGcagcag                                                                                  <  2:968273/100‑1 (MQ=255)
             cTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGcagcag                                                                                  <  1:857332/100‑1 (MQ=255)
             cTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGGGGTGTTCTGGTCGCCGGGATGcatcag                                                                                  >  2:1704099/1‑100 (MQ=255)
              ttCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCCCCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGa                                                                                 <  1:1972390/100‑1 (MQ=255)
                cTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGAtg                                                                               <  2:2438727/100‑1 (MQ=255)
                 tGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGAtgt                                                                              >  2:2990261/1‑100 (MQ=255)
                  gTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGAtgtg                                                                             >  2:1409556/1‑100 (MQ=255)
                  gTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGAtgtg                                                                             <  2:3142190/100‑1 (MQ=255)
                  gTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGAtgtg                                                                             >  2:2010186/1‑100 (MQ=255)
                    cgcgACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGtt                                                                           >  1:1034527/1‑100 (MQ=255)
                        aCCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTtcg                                                                       <  2:4221668/100‑1 (MQ=255)
                        aCCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGGGGTGTTCAGGTCGCCGGATTGCAGCAGATGTGTTTtcg                                                                       >  1:1608951/1‑100 (MQ=255)
                         cccACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTtcgt                                                                      >  2:1671874/1‑100 (MQ=255)
                           cACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTtcgtcg                                                                    <  2:971605/100‑1 (MQ=255)
                           cACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTtcgtcg                                                                    <  2:1283347/100‑1 (MQ=255)
                           cACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTtcgtcg                                                                    <  1:3546806/100‑1 (MQ=255)
                             cTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTCGCCCACTTTTCACCGACGTGGTGGTCAGGTCGCCGGGTTGCAGCAGATGTGTTTtcgtcg                                                                    <  1:1461105/98‑1 (MQ=255)
                              tGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTcgtcgccg                                                                 >  2:2072980/1‑100 (MQ=255)
                              tGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTcgtcgccg                                                                 >  2:250056/1‑100 (MQ=255)
                                tAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTcgtcgccgtc                                                               >  1:3638392/1‑100 (MQ=255)
                                tAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTcgtcgccgtc                                                               >  1:4404198/1‑100 (MQ=255)
                                  aCGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTcgtcgccgtcgc                                                             >  1:4269461/1‑100 (MQ=255)
                                   cGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCgtcgccgtcgcc                                                            <  2:1481402/100‑1 (MQ=255)
                                    ggTGCCCAGCCATTTGGCGCATACCATTGTTGCCCACTTTTCCCCGACGTGGTGTTCAGGTCGCCGGTTTGCGCCAGCTGTGTTTTcgtcgcc                                                                  >  1:2564791/1‑93 (MQ=255)
                                     gTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCAt                                                          >  2:2428718/1‑100 (MQ=255)
                                        cccAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTTATTTTTTTTGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTTGTCGCCGTCGCCAtttt                                                       >  1:3160270/1‑100 (MQ=255)
                                         ccAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttg                                                      >  1:1642601/1‑100 (MQ=255)
                                         ccAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttg                                                      >  1:1323867/1‑100 (MQ=255)
                                         ccAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttg                                                      <  2:2131624/100‑1 (MQ=255)
                                         ccAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttg                                                      >  1:1952128/1‑100 (MQ=255)
                                         ccAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttg                                                      <  1:2333079/100‑1 (MQ=255)
                                           aGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttgtt                                                    <  2:3303095/100‑1 (MQ=255)
                                           aGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTttgtt                                                    >  1:4174299/1‑100 (MQ=255)
                                              cATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGgc                                                 <  2:4079499/100‑1 (MQ=255)
                                                 ttGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGcgcg                                              <  2:2103853/100‑1 (MQ=255)
                                                     cgcATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCt                                          >  2:2903742/1‑100 (MQ=255)
                                                       cATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCttt                                        >  1:546960/1‑100 (MQ=255)
                                                        aTCCCATTGTTGCCCACTTTTCACCGCCGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTc                                       <  1:2633587/100‑1 (MQ=255)
                                                        aTCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTc                                       >  1:2429465/1‑100 (MQ=255)
                                                        aTCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTc                                       <  1:3233049/100‑1 (MQ=255)
                                                         tCCCATTGTTGCCCACTTTTAACCGAAGTCGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCTATCTTTCg                                      <  2:648408/100‑1 (MQ=255)
                                                          cccATTGTTGCCCACTTTTCACCGCCGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGc                                     <  1:2526251/100‑1 (MQ=255)
                                                          cccATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGc                                     <  2:823201/100‑1 (MQ=255)
                                                          cccATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGc                                     >  2:2757652/1‑100 (MQ=255)
                                                           ccATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCt                                    <  2:3160288/100‑1 (MQ=255)
                                                            cATTGTTGCCCACTTTTCACCGACGTTGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCt                                    <  1:2010179/99‑1 (MQ=255)
                                                             aTTGTTGTCCATTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTg                                   <  2:629292/99‑1 (MQ=255)
                                                              ttgttgCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGcc                                 <  2:3387710/100‑1 (MQ=255)
                                                                gttgCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGc                               >  2:340419/1‑100 (MQ=255)
                                                                   gCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTTGCGCGATCTTTCGCTGCCGCAtt                            >  1:3292163/1‑100 (MQ=255)
                                                                   gCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCAtt                            <  2:4188456/100‑1 (MQ=255)
                                                                   gCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCAtt                            >  1:1378181/1‑100 (MQ=255)
                                                                   gCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCAtt                            >  2:3973575/1‑100 (MQ=255)
                                                                   gCCCACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCAtt                            >  2:4369299/1‑100 (MQ=255)
                                                                    cccACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCAtt                            <  2:3896361/99‑1 (MQ=255)
                                                                      cACTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGAc                         <  2:2456231/100‑1 (MQ=255)
                                                                       aCTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACg                        <  1:3256890/100‑1 (MQ=255)
                                                                       aCTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGGGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGAc                         <  2:673528/99‑1 (MQ=255)
                                                                        cTTTTCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGt                       >  1:620111/1‑100 (MQ=255)
                                                                          tttCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTAc                     <  2:3042222/100‑1 (MQ=255)
                                                                           ttCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACa                    >  2:1885303/1‑100 (MQ=255)
                                                                           ttCACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATCGACGtcc                     >  1:331103/1‑97 (MQ=255)
                                                                             cACCGACGTGGTGTTCAGGTCGCCGGGTTTCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATCGACGTACAGc                  >  1:2905539/1‑100 (MQ=255)
                                                                             cACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGc                  >  1:834109/1‑100 (MQ=255)
                                                                             cACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGc                  >  2:114319/1‑100 (MQ=255)
                                                                             cACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGc                  >  2:2034820/1‑100 (MQ=255)
                                                                             cACCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGc                  >  1:1686683/1‑100 (MQ=255)
                                                                              aCCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCg                 >  1:2960825/1‑100 (MQ=255)
                                                                              aCCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCg                 >  2:2771964/1‑100 (MQ=255)
                                                                              aCCGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCg                 >  2:165594/1‑100 (MQ=255)
                                                                               ccGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCgg                <  2:2802143/100‑1 (MQ=255)
                                                                               ccGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCgg                >  1:825031/1‑100 (MQ=255)
                                                                               ccGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCgg                >  1:3759569/1‑100 (MQ=255)
                                                                               ccGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCgg                <  2:3676301/100‑1 (MQ=255)
                                                                                cGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCggg               <  1:2695341/100‑1 (MQ=255)
                                                                                cGACGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCggg               <  2:3613022/100‑1 (MQ=255)
                                                                                   cGTGGTGTTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAAc            <  1:1741305/100‑1 (MQ=255)
                                                                                     tggtgTTCAGGTCGCCGGGTTGCAGCAGATGTGGTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAg          <  1:3576007/100‑1 (MQ=255)
                                                                                       gtgtTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAggg        <  2:546962/100‑1 (MQ=255)
                                                                                       gtgtTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAggg        <  1:1885296/100‑1 (MQ=255)
                                                                                         gtTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcg      >  1:3870603/1‑100 (MQ=255)
                                                                                         gtTCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcg      >  2:1786293/1‑100 (MQ=255)
                                                                                          ttCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcgg     <  2:3700188/100‑1 (MQ=255)
                                                                                          ttCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcgg     <  1:3135321/100‑1 (MQ=255)
                                                                                          ttCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcgg     <  2:2171124/100‑1 (MQ=255)
                                                                                          ttCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcgg     <  2:3152436/100‑1 (MQ=255)
                                                                                           tCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcggc    >  2:532759/1‑100 (MQ=255)
                                                                                           tCAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGggcggc    >  2:536101/1‑100 (MQ=255)
                                                                                            cAGGTCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGGGCGGcc   >  1:1033791/1‑100 (MQ=255)
                                                                                                |                                                                                                
TAGTTTTGTAATCCTTCTGTCGCGACCCACTGTAACGGTGCCCAGCCATTTGGCGCATCCCATTGTTGCCCACTTTTCACCGACGTGGTGTTCAGGCCGCCGGGTTGCAGCAGATGTGTTTTCGTCGCCGTCGCCATTTTGTTGGCGCGATCTTTCGCTGCCGCATTGACGTACAGCGGGAACAGGGCGGCCG  >  NC_000913/1245977‑1246169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: