Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,512,561 Δ1 bp intergenic (‑217/+73) yhfZ ← / ← trpS putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,512,5600T.98.2% 492.0 / 1.4 109intergenic (‑216/+74)yhfZ/trpSputative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/2);  new base . (55/52);  total (55/54)
Fisher's exact test for biased strand distribution p-value = 2.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 119 total aligned reads displayed.

TAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCA  >  NC_000913/3512462‑3512655
                                                                                                  |                                                                                               
tAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAta                                                                                                >  2:879452/1‑99 (MQ=255)
 aaaaaaaCCGGGTTTCCCCGGTCTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtac                                                                                               >  2:2475472/1‑98 (MQ=255)
  naaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact                                                                                              >  1:1861869/2‑97 (MQ=255)
  agaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact                                                                                              >  1:2299446/3‑97 (MQ=255)
  aaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtact                                                                                              >  2:422918/1‑97 (MQ=255)
   aaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCAtactt                                                                                             <  1:144533/100‑5 (MQ=255)
      aaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGt                                                                                         <  1:879452/100‑1 (MQ=255)
       aCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTa                                                                                        <  1:2250119/100‑1 (MQ=255)
        ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAg                                                                                       <  2:1515046/100‑1 (MQ=255)
        ccGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAg                                                                                       >  2:1598922/1‑100 (MQ=255)
         cGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAg                                                                                       <  1:1811546/100‑1 (MQ=255)
         cGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAgg                                                                                      >  1:2540167/1‑100 (MQ=255)
          gggTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGc                                                                                     >  1:1513334/1‑100 (MQ=255)
            ttttCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCg                                                                                   <  1:1941890/99‑1 (MQ=255)
            gTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCg                                                                                   <  1:352195/100‑1 (MQ=255)
             tttCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCga                                                                                  >  2:1941886/1‑99 (MQ=255)
               tCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGAt                                                                                >  1:3399999/1‑100 (MQ=255)
                ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGGTGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATa                                                                               >  2:1480105/1‑100 (MQ=255)
                ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATa                                                                               >  2:3006262/1‑100 (MQ=255)
                ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATa                                                                               >  2:12004/1‑100 (MQ=255)
                ccccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATa                                                                               >  2:787301/1‑100 (MQ=255)
                  ccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAg                                                                             >  2:1810718/1‑100 (MQ=255)
                  ccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAg                                                                             <  1:3068162/100‑1 (MQ=255)
                  ccGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAg                                                                             >  2:3068150/1‑100 (MQ=255)
                      tttCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGTCCGGATAAGGctt                                                                         <  1:2295148/100‑3 (MQ=255)
                       ttCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGtt                                                                        <  1:1854266/100‑1 (MQ=255)
                        tCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTc                                                                       <  2:2498334/100‑1 (MQ=255)
                         cAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCa                                                                      >  2:278485/1‑100 (MQ=255)
                            agTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCAcgc                                                                   <  1:1978475/100‑1 (MQ=255)
                            agTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCAcgc                                                                   >  2:1381321/1‑100 (MQ=255)
                             gTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                  >  2:963641/1‑100 (MQ=255)
                             gTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                  <  1:469504/100‑1 (MQ=255)
                              tgatgaTAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCAcgccg                                                                 <  2:1296447/100‑1 (MQ=255)
                               gatgatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCAcgccgc                                                                >  2:329253/1‑100 (MQ=255)
                                  gatAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATc                                                             >  2:2775514/1‑100 (MQ=255)
                                   atAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                                                            <  2:3238605/100‑1 (MQ=255)
                                     aaaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                                                          <  2:3399986/100‑1 (MQ=255)
                                      aaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                         <  2:179416/100‑1 (MQ=255)
                                      aaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc                                                         >  2:2917119/1‑100 (MQ=255)
                                         gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg                                                      <  1:1752358/100‑1 (MQ=255)
                                         gCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATg                                                      >  2:503454/1‑100 (MQ=255)
                                          cAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa                                                     >  1:1825589/1‑100 (MQ=255)
                                           aaaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa                                                    >  1:3160765/1‑100 (MQ=255)
                                            aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                   <  2:111288/100‑1 (MQ=255)
                                            aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                   >  2:767489/1‑100 (MQ=255)
                                            aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                   <  1:2001471/100‑1 (MQ=255)
                                             aaTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACa                                                  <  1:1810722/100‑1 (MQ=255)
                                               ttGCCTGATGCGCTGCGCTTATCTGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAAc                                                   <  2:2841000/97‑1 (MQ=25)
                                                tGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg                                               <  2:2155662/100‑1 (MQ=255)
                                                 gCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgc                                              >  1:1120935/1‑100 (MQ=255)
                                                    tGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCa                                           <  2:3222081/100‑1 (MQ=255)
                                                     gATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCaa                                          >  2:26277/1‑100 (MQ=255)
                                                        gcgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAttt                                       <  2:1592851/100‑1 (MQ=255)
                                                        gcgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAAttt                                       >  2:3056669/1‑100 (MQ=255)
                                                         cgcTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTg                                      >  1:174539/1‑100 (MQ=255)
                                                           cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGcc                                    >  2:1054414/1‑100 (MQ=255)
                                                             aCGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg                                  >  2:563109/1‑100 (MQ=255)
                                                             aCGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg                                  <  1:2475480/100‑1 (MQ=255)
                                                              cGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGc                                 >  2:60065/1‑100 (MQ=255)
                                                               tcTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAg                                  <  1:417179/97‑1 (MQ=255)
                                                               tcTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCa                                <  1:988336/99‑1 (MQ=255)
                                                                cTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCaa                               >  2:2332846/1‑100 (MQ=255)
                                                                cTTATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCaa                               <  1:1603927/100‑1 (MQ=255)
                                                                 ttATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAt                              <  2:2606729/100‑1 (MQ=255)
                                                                  tATCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAgagatc                             >  2:417178/1‑95 (MQ=255)
                                                                   ntCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg                            >  2:2656974/2‑100 (MQ=255)
                                                                   aTCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAg                            <  2:1283274/100‑1 (MQ=255)
                                                                    tCAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAgn                           <  1:2933792/100‑2 (MQ=255)
                                                                     cAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAgagatcgga                          >  2:3362047/1‑92 (MQ=21)
                                                                     cAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg                          <  2:41937/100‑1 (MQ=255)
                                                                     cAGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTg                          >  2:2945060/1‑100 (MQ=255)
                                                                      aGGCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGa                         >  2:1301615/1‑100 (MQ=255)
                                                                       ggCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGaa                        >  1:298634/1‑100 (MQ=255)
                                                                       ggCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGaa                        >  1:878661/1‑100 (MQ=255)
                                                                       ggCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGaa                        >  1:2893082/1‑100 (MQ=255)
                                                                        gCCTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAt                       >  2:3302660/1‑100 (MQ=255)
                                                                         ccTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt                      >  1:1182566/1‑100 (MQ=255)
                                                                         ccTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAAtt                      >  2:499458/1‑100 (MQ=255)
                                                                          cTACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTa                     >  2:1554846/1‑100 (MQ=255)
                                                                           tACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAc                    >  1:111304/1‑100 (MQ=255)
                                                                           tACATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAc                    <  1:1554849/100‑1 (MQ=255)
                                                                             cATTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACgg                  <  2:3136289/100‑1 (MQ=255)
                                                                              aTTTCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGc                 <  2:2299440/100‑1 (MQ=255)
                                                                               tttCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCt                <  1:2917130/100‑1 (MQ=255)
                                                                                 tCCTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTc              >  1:3227718/1‑100 (MQ=255)
                                                                                  ccTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCg             >  2:3044087/1‑100 (MQ=255)
                                                                                  ccTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTAAGGCTTCg             <  1:329254/100‑1 (MQ=255)
                                                                                   cTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc            >  2:3320312/1‑100 (MQ=255)
                                                                                   cTTGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGc            >  2:610839/1‑100 (MQ=255)
                                                                                    ttGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc           <  2:3227705/100‑1 (MQ=255)
                                                                                    ttGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGcc           <  1:60065/100‑1 (MQ=255)
                                                                                     tGCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCca          <  2:1182563/100‑1 (MQ=255)
                                                                                      gCAATATGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCcac         <  2:1403244/100‑1 (MQ=255)
                                                                                         atatGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaa      <  2:2014766/100‑1 (MQ=255)
                                                                                         atatGTGCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACaaa      <  1:3153713/100‑1 (MQ=255)
                                                                                            tgtgCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc   >  2:2186074/1‑100 (MQ=255)
                                                                                            tgtgCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc   <  1:278486/100‑1 (MQ=255)
                                                                                            tgtgCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc   >  2:157867/1‑100 (MQ=255)
                                                                                             gtgCATACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCa  >  1:453953/1‑100 (MQ=255)
                                                                                             cgatcttACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAAcc   <  2:824207/95‑1 (MQ=255)
                                                                                                  |                                                                                               
TAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAATAGTGAATTACGGCTTCGCCACAAAACCA  >  NC_000913/3512462‑3512655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: