BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,781,131	0	T	C	20.0%	247.6 / 14.3	108	intergenic (+114/‑84)	lldD/trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand): ref base T (56/28); new base C (0/21); total (56/52)
Fisher's exact test for biased strand distribution p-value = 6.11e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 109 total aligned reads displayed.

CACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTA  >  NC_000913/3781033‑3781229

  cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCg                                                                                                    >  2:1876718/1‑100 (MQ=255)

   ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCgg                                                                                                   <  1:3023358/100‑1 (MQ=255)

   ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCgg                                                                                                   >  1:1755974/1‑100 (MQ=255)

   ccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCgg                                                                                                   <  2:2652618/100‑1 (MQ=255)

      aaCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGACCCTCCGGGga                                                                                                >  1:1099837/1‑100 (MQ=255)

       acactctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCCCTCTGAAACGACACCGCACTCTTTTTTTTTCC‑CTCGCCCCTCCGGGgag                                                                                               <  2:1345261/97‑1 (MQ=255)

        cccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGgaga                                                                                              <  2:2561843/100‑1 (MQ=255)

        cccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGgag                                                                                               >  1:1496263/1‑99 (MQ=255)

         ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGagag                                                                                             <  2:718195/100‑1 (MQ=255)

         ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGagag                                                                                             <  1:1530256/100‑1 (MQ=255)

          ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAgg                                                                                            <  2:1725844/100‑1 (MQ=255)

            ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGc                                                                                          <  1:3369442/100‑1 (MQ=255)

              cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCTGGGAGAGGGCC‑g                                                                                       >  2:2163764/1‑100 (MQ=255)

              cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑g                                                                                       >  1:3141025/1‑100 (MQ=255)

              cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑g                                                                                       <  1:1905586/100‑1 (MQ=255)

              cccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑g                                                                                       >  2:435292/1‑100 (MQ=255)

               ccTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑gg                                                                                      >  1:1027559/1‑100 (MQ=255)

                cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑ggg                                                                                     >  2:3322391/1‑100 (MQ=255)

                cTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑ggg                                                                                     <  1:1805343/100‑1 (MQ=255)

                 tCAGGGAGAGGGGACCTTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑gggg                                                                                    <  2:1991843/100‑1 (MQ=255)

                 tCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑gggg                                                                                    <  1:1574454/100‑1 (MQ=255)

                  cAGGGAGAGGGGACCGTTCGGCGCTGTATGTGCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGt                                                                                   <  2:1199098/100‑1 (MQ=255)

                  cAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGt                                                                                   >  1:1240665/1‑100 (MQ=255)

                   aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTg                                                                                  <  2:1890654/100‑1 (MQ=255)

                   aGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTg                                                                                  <  2:3194865/100‑1 (MQ=255)

                       agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                              <  1:2525156/100‑1 (MQ=255)

                       agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                              <  1:2766826/100‑1 (MQ=255)

                        gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg‑g                                                                            >  2:1547431/1‑100 (MQ=255)

                        gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg‑g                                                                            <  2:32771/100‑1 (MQ=255)

                            ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑aaaa                                                                       >  1:2189997/1‑100 (MQ=255)

                             gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGCGAGGGCC‑AGGGTGAGGG‑G‑AAAAg                                                                      >  1:2830124/1‑100 (MQ=255)

                             gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAg                                                                      >  2:2729489/1‑100 (MQ=255)

                             gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAg                                                                      <  1:3111586/100‑1 (MQ=255)

                              tctgTTCGGCGCTGTATGTACTCCCTCACACCGACACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑ATAAg                                                                      <  1:587993/96‑1 (MQ=37)

                               ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGc                                                                    >  2:45768/1‑100 (MQ=255)

                                 gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAggga                                                                   >  2:587992/1‑97 (MQ=255)

                                   tCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCa                                                                >  2:833720/1‑100 (MQ=255)

                                     ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACt                                                              >  1:721934/1‑100 (MQ=255)

                                      gcgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTg                                                             >  1:3189463/1‑100 (MQ=255)

                                        gcTGTATTTCCCCCCCCCCCCTAAACCGACCCCGCACTC‑TTTTTTCCCC‑CCCCCCCCCCCGGGGGGGGGGCCGGGGGGGGGGG‑G‑AAAAGGCCGc                                                                 <  2:1222325/94‑1 (MQ=255)

                                        gcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCt                                                           >  1:1410975/1‑100 (MQ=255)

                                         cTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAACGGCCGCACTGCTc                                                          >  2:1953272/1‑100 (MQ=255)

                                          tgtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCa                                                         >  2:1369640/1‑100 (MQ=255)

                                             ttccgatctcTCACTCGGAAACGACCCCGCACTCTTTTTTTCTCC‑CGCGCCCCCCCGGGGGGGGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTc                                                          <  2:2300780/87‑1 (MQ=255)

                                             atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCa                                                      >  1:1706318/1‑100 (MQ=255)

                                             atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCa                                                      >  1:1705791/1‑100 (MQ=255)

                                              tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCaa                                                     >  2:2248076/1‑100 (MQ=255)

                                               gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAAt                                                    >  2:1864433/1‑100 (MQ=255)

                                                     ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTg                                              >  2:1347117/1‑100 (MQ=255)

                                                     ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTg                                              >  1:3183117/1‑100 (MQ=255)

                                                      ccccctctAAAACGACCCCCCCCTCTTTTTTCCCCC‑CCCCCCCCCCCGGGGAGGGGGCG‑GGGGGGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGc                                             <  1:480527/96‑1 (MQ=255)

                                                      cTCCCTCTAAAGCGACACCGCACTCTTTTTTTCCCC‑CCCGCCCCCCCGGGGAGAGGCCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGc                                             <  2:1326902/100‑1 (MQ=255)

                                                      cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑CAAAGGCCGCCCTGCTCACCAATTTTCTGc                                             >  2:3077151/1‑100 (MQ=255)

                                                       tCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt                                            >  1:2265495/1‑100 (MQ=255)

                                                        cACTCTAAAACGACACCGCACTCTTTTTTTCGCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                           <  2:1068236/100‑1 (MQ=255)

                                                            ctGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                       >  1:2005585/1‑100 (MQ=255)

                                                            ctGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                       >  1:1336380/1‑100 (MQ=255)

                                                                aaCGACCCCGCCCTCTTTTTTCCCCC‑CTCGCCCCCCGGGGGAGGGGCCG‑GGGGTGGGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                   <  2:2490489/100‑1 (MQ=255)

                                                                  cGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                 >  2:1934883/1‑100 (MQ=255)

                                                                  cGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccccc                                 >  1:1333874/1‑100 (MQ=255)

                                                                   gACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                >  1:2461463/1‑100 (MQ=255)

                                                                   gACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                >  1:2705697/1‑100 (MQ=255)

                                                                      nccGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                             >  2:1101061/2‑100 (MQ=255)

                                                                       ccGCCCTTTTTTTTTCCCC‑CCCGCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                             <  2:1336377/99‑1 (MQ=255)

                                                                       ccGCCCTCTTTTTTTCCCC‑CTCGCCCCCCGGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                             <  2:2265489/99‑1 (MQ=38)

                                                                          cgctctTTTTTTCCCC‑CTCTCCCCCCCGGGGAGATGCCG‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc                                    <  2:1306190/87‑1 (MQ=255)

                                                                          cACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                         >  1:1892018/1‑100 (MQ=255)

                                                                           ccgttttttgtCTCCGCTCCCCCCCCGGAGGGGAGGGCG‑GGGGTGGGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGTCCCCGCAc                             <  1:2175069/92‑1 (MQ=255)

                                                                           ccctcttttttCCCC‑CCCCCCCCTCCGGGGGGGGGGGC‑GGGGGGGGGG‑GAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                          <  1:3322404/94‑1 (MQ=255)

                                                                             tctTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                      >  2:2793058/1‑100 (MQ=255)

                                                                              ctTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                     >  2:3149337/1‑100 (MQ=255)

                                                                              ctTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                     >  2:1150833/1‑100 (MQ=255)

                                                                               tttttttCTCC‑CTCGCCCCCCCGGGGAGGGGGCG‑GGGGGGAGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                       <  2:3064999/97‑1 (MQ=255)

                                                                               tttttttCTCC‑CCCCCCCCGCCGGGGGGGGGGCC‑GGGGGGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                    <  1:2466641/100‑1 (MQ=255)

                                                                               tttttttC‑CC‑CCCCCCCCCCCGGGGGGGGGGCCGGGGGTGAGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                       <  2:3189450/97‑1 (MQ=255)

                                                                                ttttttCCCC‑CGGGCCCCCCCGGGGGGGGGGCG‑GGGGGGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                    <  2:2791790/99‑1 (MQ=255)

                                                                                ttttttCACC‑CAACCCCCCCGGGAGAGGCGCCC‑GGGGTGGGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc                                    <  2:2203588/83‑1 (MQ=255)

                                                                                 tttttCCCC‑CCCCCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                  <  1:435293/100‑1 (MQ=255)

                                                                                  ttttCCCC‑CCCCCCCCGCGGGGGGGGGGGCG‑GGGGTGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                 <  1:1876722/100‑1 (MQ=255)

                                                                                   tttCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                >  1:1704695/1‑100 (MQ=255)

                                                                                   tttCTCC‑CTCCCCCTTCGGGGGAGGGGGCG‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                <  1:1369643/100‑1 (MQ=255)

                                                                                    ttCTCC‑CCCGCCCCCCGGGGGGGGGGGCG‑GGGGGGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt               <  1:1101063/100‑1 (MQ=255)

                                                                                    ttCCCC‑CCCGCCCCCCCGGGGAGGGGCCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                <  2:1410972/99‑1 (MQ=255)

                                                                                    tccccc‑cTCCCCCCCGGGGGGGGGGGGCG‑GGGGGGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTa                <  1:3149349/95‑1 (MQ=255)

                                                                                     tctcC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggagatcggaag              >  2:736080/1‑90 (MQ=255)

                                                                                      ctcC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc             >  2:582918/1‑100 (MQ=255)

                                                                                      cccc‑cTCGCCCCCCGGGGGAGGGGGCG‑GGGGTGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc             <  1:1547434/98‑1 (MQ=255)

                                                                                       ccccccccccccccCGGGGGAGGGGCC‑GGGGGGGGGG‑GAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg              <  1:2729498/92‑1 (MQ=255)

                                                                                       ccc‑cTCGCCCCCCGGGGGGGGGGGCG‑GGGGTGGGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt               <  1:183707/96‑1 (MQ=255)

                                                                                        cc‑cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa           >  1:33360/1‑100 (MQ=255)

                                                                                        cc‑cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa           >  1:2577297/1‑100 (MQ=255)

                                                                                         c‑cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa          >  2:2577672/1‑100 (MQ=255)

                                                                                           cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa         >  2:1721530/1‑100 (MQ=255)

                                                                                           cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa         >  1:1721217/1‑100 (MQ=255)

                                                                                            cgcccccTCCGGGGGGGAGGCC‑GGGGGGGGGGTT‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa         <  1:2648896/97‑1 (MQ=255)

                                                                                             cGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACa       >  2:2865503/1‑100 (MQ=255)

                                                                                                cccTCGGGGGGGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg    <  1:579783/100‑1 (MQ=255)

                                                                                                cccTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg    >  1:676210/1‑100 (MQ=255)

                                                                                                  cTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa  >  1:607656/1‑100 (MQ=255)

                                                                                                  cTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGAACTAAGGGGGCAGTATGCTAAACATCGTa  >  2:1361687/1‑100 (MQ=255)

CACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCC‑CTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGG‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTA  >  NC_000913/3781033‑3781229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`