Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,972,860 (T)7→6 100% coding (1003/1194 nt) lplT ← lysophospholipid transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,972,8540T.84.9% 320.8 / 61.0 106coding (1009/1194 nt)lplTlysophospholipid transporter
Reads supporting (aligned to +/- strand):  ref base T (10/5);  new base . (42/48);  total (52/54)
Fisher's exact test for biased strand distribution p-value = 1.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 118 total aligned reads displayed.

CCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCA  >  NC_000913/2972757‑2972949
                                                                                                 |                                                                                               
ccTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttt                                                                                               <  2:1395565/100‑1 (MQ=255)
 cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttt                                                                                              >  1:83788/1‑100 (MQ=255)
 cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttt                                                                                              >  2:418313/1‑100 (MQ=255)
 cTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACACtttt                                                                                              >  2:23478/1‑100 (MQ=255)
  tATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttt                                                                                             >  1:74042/1‑100 (MQ=255)
    tCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCtttttta                                                                                           >  2:156714/1‑99 (MQ=255)
     cATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttac                                                                                          >  2:2013193/1‑98 (MQ=255)
     cATTACCGCCAGCGAGTAAATGCCCACCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACCCttttttac                                                                                          >  1:2230115/1‑98 (MQ=255)
      aTTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttacc                                                                                         >  2:1624578/1‑97 (MQ=255)
      aTTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttacc                                                                                         >  2:234976/1‑97 (MQ=255)
       ttACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCttttttaccc                                                                                        <  1:2031500/100‑5 (MQ=255)
       ttACCGCCAGCGAGTAAATGCCCAGCAACAACAACATGGCGCTGTTTTCGTCAGGGTATTGTACTGGAAGAGCATTCCCCGCCGCAACGAttttttacc                                                                                         >  1:923866/1‑96 (MQ=255)
        tACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCTGACGCTTTTTTAcccc                                                                                      <  2:585124/100‑1 (MQ=255)
        tACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTAccc                                                                                       <  1:1440107/100‑1 (MQ=255)
          ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCTAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGc                                                                                    >  1:846805/1‑100 (MQ=255)
          ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCg                                                                                     >  1:263648/1‑100 (MQ=255)
          ccGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGc                                                                                    >  2:360814/1‑100 (MQ=255)
           cGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTACAATCGCATTCCCCGCCCCGACGCTTTTTTACCACGCt                                                                                   >  1:170463/1‑100 (MQ=255)
             cgatctaGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTcc                                                                                 <  1:1169296/94‑1 (MQ=255)
             ccAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTcc                                                                                 <  1:1743656/100‑1 (MQ=255)
              cAGCGAGTAAATGCCCATCATCAACAACATTCCTCTGTTTTCGCCAAGGTTTTCTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTcc                                                                                 <  1:2105267/99‑1 (MQ=255)
              cAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTcc                                                                                 <  2:1630936/100‑1 (MQ=255)
              cAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCt                                                                                >  1:1473585/1‑100 (MQ=255)
              cAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCt                                                                                >  1:1993191/1‑100 (MQ=255)
               aGCGAGTAAATGCCTAGCATCAACAACATCGCGCTGTTTTCGCCAAGTTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTg                                                                               <  1:2221708/100‑1 (MQ=255)
               aGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTg                                                                               >  1:2162341/1‑100 (MQ=255)
               aGCGAGTAAATGCCCAGCATAAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTg                                                                               >  1:1584345/1‑100 (MQ=255)
                gCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGt                                                                              >  2:2464337/1‑100 (MQ=255)
                 cGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTTTa                                                                             >  1:1069600/1‑100 (MQ=255)
                 cGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTa                                                                             >  2:261578/1‑100 (MQ=255)
                   aGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTccagatcg                                                                           >  2:1169300/1‑94 (MQ=255)
                    gTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCa                                                                          >  1:296275/1‑100 (MQ=255)
                       aaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAAc                                                                        >  2:1999677/1‑99 (MQ=255)
                       aaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACg                                                                       <  2:1303721/100‑1 (MQ=255)
                       aaTGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACg                                                                       <  1:523060/100‑1 (MQ=255)
                         tGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGc                                                                      >  2:832097/1‑100 (MQ=255)
                          gCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCAt                                                                    <  2:182089/100‑1 (MQ=255)
                           cccAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCAtt                                                                   >  2:1300993/1‑100 (MQ=255)
                            ccAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTg                                                                  <  1:476025/100‑1 (MQ=255)
                             cAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGa                                                                 >  2:941640/1‑100 (MQ=255)
                             cAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGa                                                                 >  2:2198554/1‑100 (MQ=255)
                                cATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCg                                                              <  1:711917/100‑1 (MQ=255)
                                cATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCg                                                              <  2:1650008/100‑1 (MQ=255)
                                    aacaacATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAAc                                                          >  2:505196/1‑100 (MQ=255)
                                     acaacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCACTCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGc                                                               >  1:907081/1‑94 (MQ=255)
                                      caacaTGGCGCTGTTTTCGCGAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGa                                                        >  1:1200815/1‑100 (MQ=255)
                                       aacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGAc                                                       <  1:202759/100‑1 (MQ=255)
                                       aacaTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGAc                                                       <  2:803644/100‑1 (MQ=255)
                                        acaTGGCGCTGTTTTCGCCAAGGTTTTGTAGTGAAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACa                                                      >  1:1698768/1‑100 (MQ=255)
                                          aTGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACaa                                                     >  2:589441/1‑100 (MQ=255)
                                            gtcgcTGTTTTCGCCAAGGTTTGGTACTGCAATCGCATTGCCCGCCCCGACGCTTTTTTACCCCGCGCCTGTAGCAACGCATTGAGCGGAACGACaa                                                     <  1:989985/95‑1 (MQ=255)
                                              cgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAg                                                >  2:1797799/1‑100 (MQ=255)
                                              cgcTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAg                                                <  2:1261065/100‑1 (MQ=255)
                                                cTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcc                                              <  2:1585572/100‑1 (MQ=255)
                                                 tGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccc                                             <  2:1269509/100‑1 (MQ=255)
                                                  gTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTCTCTTCTTCTTTATCAACGCATTGAGCGGAACAACAAAAAAGccc                                             >  1:954636/1‑99 (MQ=255)
                                                  gTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGcccc                                            >  2:1890774/1‑100 (MQ=255)
                                                   ttttCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccccc                                           <  1:1418642/100‑1 (MQ=255)
                                                    tttCGCCAAGGTTGTGTACTGCAATCGCATACCCCGCCCCGACGATTTTTGACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccccc                                           <  1:235202/99‑1 (MQ=255)
                                                       cGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGCACGACAAAAAAGCCCCCCATc                                       >  1:1147138/1‑100 (MQ=255)
                                                        gCCAAGGTTTTGTACTGCCATCGCATTCCCCGCCCCGCCGCTTTTTTTACCGCGCTCCGGGCGCACCCCCCTGAGCGGGACGGCGAAAACGcccccc                                          >  1:2371035/1‑97 (MQ=255)
                                                         ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCCCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGccgccc                                          >  1:1756892/1‑96 (MQ=255)
                                                         ccAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCAc                                     >  1:2040113/1‑100 (MQ=255)
                                                            aGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc                                  <  1:1300987/100‑1 (MQ=255)
                                                            aGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc                                  <  2:1770085/100‑1 (MQ=255)
                                                             ggTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCGCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGcc                                  <  2:2450423/100‑1 (MQ=255)
                                                                tttGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATc                              <  2:83789/100‑1 (MQ=255)
                                                                  tGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCa                             <  1:589439/100‑1 (MQ=255)
                                                                  tGTACTGCAATCGCATGCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAAAAGAACAACAAAAAAGCCCCCCCTCACGCCAATCAg                            <  1:1777729/100‑1 (MQ=255)
                                                                    tACTGCAATCGCGTTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGCCAAAAAAGCCCCCCATCACGCCACTCa                             >  1:1521982/1‑98 (MQ=255)
                                                                     aCTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCAt                         <  1:234974/100‑1 (MQ=255)
                                                                      cTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATc                        <  1:188358/100‑1 (MQ=255)
                                                                      cTGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATc                        >  2:554597/1‑100 (MQ=255)
                                                                       tGCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATca                       <  2:925307/100‑1 (MQ=255)
                                                                       ctcAATCGCATTCCCCTCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATca                       <  1:1512567/98‑1 (MQ=255)
                                                                        ncAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaa                      >  2:2018095/2‑100 (MQ=255)
                                                                        gCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACGACAAAACCACCCATCACGCCAATCAgaa                          >  1:1117038/1‑95 (MQ=255)
                                                                        gCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaa                      >  2:705896/1‑100 (MQ=255)
                                                                        gCAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaa                      >  2:2357716/1‑100 (MQ=255)
                                                                         cAATCGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaac                     >  2:165048/1‑100 (MQ=255)
                                                                          atctgCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaaca                    <  2:275034/96‑1 (MQ=255)
                                                                           aTCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATcaaca                    <  2:1547452/100‑1 (MQ=255)
                                                                             cGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgg                 <  2:1901849/100‑1 (MQ=255)
                                                                             cGCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgg                 <  2:1583572/100‑1 (MQ=255)
                                                                             cGCATGCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgg                 <  1:778922/100‑1 (MQ=255)
                                                                              gCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAgat                >  1:275031/1‑98 (MQ=255)
                                                                              gCATTCCCCGCCCCGACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGc                <  2:2175790/100‑1 (MQ=255)
                                                                                   ccccgccccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATaag           >  2:2588881/1‑98 (MQ=255)
                                                                                   ccccgccccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAgg           >  2:2333688/1‑100 (MQ=255)
                                                                                    cccgccccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGc          >  1:2204309/1‑100 (MQ=255)
                                                                                       gccccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTgg       <  2:1785748/100‑1 (MQ=255)
                                                                                        ccccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgc      <  2:711119/100‑1 (MQ=255)
                                                                                        ccccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgc      <  2:2204324/100‑1 (MQ=255)
                                                                                         cccgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgca     <  1:418311/100‑1 (MQ=255)
                                                                                           cgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc   <  2:208368/100‑1 (MQ=255)
                                                                                           cgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc   <  2:208623/100‑1 (MQ=255)
                                                                                           cgACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc   >  1:828053/1‑100 (MQ=255)
                                                                                           cgACGCTTTTTTACCCCGCTCCTGGAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCCCGCCAATCAGCATCAACAAGGCATAGGCTGgcag    <  1:514993/99‑1 (MQ=255)
                                                                                           cgACGCTTTTTTACCCCGCTCCTGAAGCAACGCCTTGAGCGGAACGACAAAAAAGCCCCCCAGCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagc   <  1:226239/100‑1 (MQ=255)
                                                                                            gACGCTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGgcagca  <  1:878463/100‑1 (MQ=255)
                                                                                                 |                                                                                               
CCTATCATTACCGCCAGCGAGTAAATGCCCAGCATCAACAACATGGCGCTGTTTTCGCCAAGGTTTTGTACTGCAATCGCATTCCCCGCCCCGACGCTTTTTTTACCCCGCTCCTGTAGCAACGCATTGAGCGGAACGACAAAAAAGCCCCCCATCACGCCAATCAGCATCAACAAGGCATAGGCTGGCAGCA  >  NC_000913/2972757‑2972949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: