| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 160,864:1 | (C)6→7 | 100% | coding (623/705 nt) | sfsA ← | sugar fermentation stimulation protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 160,858 | 1 | . | C | 74.6% | 297.2 / 105.1 | 114 | coding (629/705 nt) | sfsA | sugar fermentation stimulation protein A |
| Reads supporting (aligned to +/- strand): ref base . (15/14); new base C (47/38); total (62/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 129 total aligned reads displayed.
AAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATGCAGCACGGC > NC_000913/160759‑160952 | aaaTTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTa > 1:726445/1‑100 (MQ=255) aaTTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c > 2:122397/1‑100 (MQ=255) aaTGAACCAGTTACTTACTTTACTACAAGGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTan < 2:1652718/100‑2 (MQ=255) aTTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑c > 2:970235/1‑100 (MQ=255) aaCCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccc < 1:1108997/100‑1 (MQ=255) aaCCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccc < 1:1274283/100‑1 (MQ=255) aCCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑ccccc < 2:2482496/100‑1 (MQ=255) ccAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccccc > 1:2335705/1‑99 (MQ=255) ccAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCct > 2:324138/1‑100 (MQ=255) cAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccccct > 1:2179250/1‑98 (MQ=255) cAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccccct > 2:1208112/1‑98 (MQ=255) aGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTACGCCAGAATTTCTA‑‑c‑‑cccccc < 1:1575812/98‑2 (MQ=255) ttacttacTTTACTACCATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccccctctg < 1:2238259/100‑6 (MQ=255) ttacttacTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑c‑‑cccccctctg < 1:271980/100‑6 (MQ=255) tacttactTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGt > 1:2312669/1‑100 (MQ=255) acttacttTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTg < 2:1328425/100‑1 (MQ=255) ttactttactACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCTGCTTTGTAAGCCAGAATTTTTAC‑C‑‑CCCCCTCTGTTg < 1:1057679/99‑1 (MQ=255) tactttactACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAg > 1:1740438/1‑100 (MQ=255) actttactACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGc < 1:618404/100‑1 (MQ=255) ctttactACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTACCC‑‑CCCCCTCTGTTGAGc > 2:1493705/1‑100 (MQ=255) ctttactACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCtt > 1:2243787/1‑100 (MQ=255) tactacAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTg < 2:2367125/100‑1 (MQ=255) actacAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTg > 2:1046896/1‑100 (MQ=255) actacAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTg < 2:2585231/100‑1 (MQ=255) ctacAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGa > 1:2425513/1‑100 (MQ=255) ctacAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGa > 2:549671/1‑100 (MQ=255) acAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACa > 2:1649334/1‑100 (MQ=255) cAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACaa > 1:231964/1‑100 (MQ=255) cAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAAt < 1:812021/100‑1 (MQ=255) aaTGTAACCGGCAGTGATTTTTTAAGAGCCATGACTTCAGCAGAAATTTCCGCTTTGTAAACCAGAATTCCAAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAAt > 1:989522/1‑100 (MQ=255) aTGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATa > 2:13714/1‑100 (MQ=255) tGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAg < 2:1725672/100‑1 (MQ=255) tGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGt > 2:680116/1‑100 (MQ=255) tAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGtt > 1:1042958/1‑100 (MQ=255) acccGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTg < 2:116762/98‑1 (MQ=255) aCCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTgc > 1:2220766/1‑100 (MQ=255) ccGGCAGTGATTTTTTAATAGCTATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTgcg > 1:745514/1‑100 (MQ=255) ccGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTgcg > 1:872170/1‑100 (MQ=255) cGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTACCC‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTgcg > 1:1092864/1‑100 (MQ=255) cGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTTACAATAGTTgcgc < 2:1740447/100‑1 (MQ=255) ggCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGcgcg < 1:327566/100‑1 (MQ=255) ggCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGcgcg < 2:1514339/100‑1 (MQ=255) ggCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGcgcg > 2:1282435/1‑100 (MQ=255) gTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTAtt < 2:684070/100‑1 (MQ=255) gTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTAt > 2:1162259/1‑99 (MQ=255) gATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAACCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTtct < 2:2465598/100‑1 (MQ=255) aTTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTtctc > 2:65646/1‑100 (MQ=255) aTTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTtctc > 1:2038850/1‑100 (MQ=255) tttttAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCAt > 2:433734/1‑100 (MQ=255) ttttAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCAt > 1:1393393/1‑99 (MQ=255) agagCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGAtg < 2:1412880/100‑1 (MQ=255) gagCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGAtgt < 2:1634361/100‑1 (MQ=255) gCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTgg > 2:2542461/1‑100 (MQ=255) gCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTgg > 1:1492522/1‑100 (MQ=255) cATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGgcg > 2:27848/1‑100 (MQ=255) gCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGgcgcgc > 2:1015522/1‑100 (MQ=255) ccTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGcgcgcg < 2:1713521/100‑1 (MQ=255) ccTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATAGATGTGgcgcgc > 1:126269/1‑99 (MQ=255) cTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCgg > 2:1915220/1‑100 (MQ=255) cTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCGGACAATAGTTGCGCGTATTTCTCATCGATGGGGCGCGCgg < 1:2117729/100‑1 (MQ=255) tCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGt < 2:1194755/100‑1 (MQ=255) agcagAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGa > 2:2572536/1‑100 (MQ=255) gcagAAATTTCCGCTTTGGAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCGTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGaa < 1:1501953/100‑1 (MQ=255) cagAAATTTCCGCTTTGTAAGCCAGACTTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGaaa > 2:1573625/1‑100 (MQ=255) cagAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTg > 2:2353689/1‑97 (MQ=255) cagAAATTTCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGaaa > 1:1190155/1‑100 (MQ=255) cacagacttCCGCTGTGTACGCCAGACTTTCTA‑‑CT‑ACCGCGCTGTTGAGCTTCTGACAACAGTAGCGCGTATTTCTCATTGATGTGGcgcgcgag < 1:1797464/88‑3 (MQ=255) tttCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCgtg < 1:999658/100‑1 (MQ=255) tttCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCgtg > 1:1232604/1‑100 (MQ=255) tttCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCgtg < 1:2204047/100‑1 (MQ=255) ttCCGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCgtgt < 2:648232/100‑1 (MQ=255) ccGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTaa > 2:371173/1‑100 (MQ=255) ccGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTaa > 2:829448/1‑100 (MQ=255) cGCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAAt > 2:1121929/1‑100 (MQ=255) cGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATCTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATg < 1:1592997/100‑1 (MQ=255) gCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATg < 1:127882/100‑1 (MQ=255) gCTTTGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATg < 1:11739/100‑1 (MQ=255) tttGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGc < 2:998237/100‑1 (MQ=255) tttGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCt > 2:1352750/1‑100 (MQ=255) ttGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCt < 2:2179265/100‑1 (MQ=255) ttGTAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCt < 1:78024/100‑1 (MQ=255) tGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGa < 1:1396390/100‑1 (MQ=255) gTAAGCCAGAGTTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGa < 1:1805777/100‑1 (MQ=255) tAAGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGaa > 1:69364/1‑100 (MQ=255) aaGCCAGAATTTCTACCC‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGaa < 2:1463280/100‑1 (MQ=255) aaGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCTCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAAt < 1:663557/100‑1 (MQ=255) aaGCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAAt < 2:154007/100‑1 (MQ=255) aaGCCAGAATTTCTAC‑C‑‑CCCCCTCTGCTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCACGCGGGTGAAAACCGTGTAATGGCTGAAt > 1:1560214/1‑100 (MQ=255) aGCCAGAATTTCTA‑‑CCGCCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGaa < 2:931081/99‑1 (MQ=255) aGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgc > 2:1972992/1‑100 (MQ=255) gCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgc > 2:453923/1‑100 (MQ=255) gCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgc < 2:745590/100‑1 (MQ=255) gCCAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATg < 1:24441/99‑1 (MQ=255) gCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATATTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCtgcatgca > 1:963982/1‑100 (MQ=255) ccAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgca > 2:1804127/1‑100 (MQ=255) cAGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgcag > 2:1897705/1‑100 (MQ=255) aGAATTTCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgcagc > 2:878241/1‑100 (MQ=255) aGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATgcagca > 2:1524509/1‑100 (MQ=255) tttCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATGCAGCACgg < 1:1159977/100‑1 (MQ=255) ttCTAC‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATGCAGCACGGc < 1:433913/100‑1 (MQ=255) | AAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGCTTTGTAAGCCAGAATTTCTA‑‑C‑‑CCCCCTCTGTTGAGCTTCTGACAATAGTTGCGCGTATTTCTCATCGATGTGGCGCGCGGGTGAAAACCGTGTAATGGCTGAATGCAGCACGGC > NC_000913/160759‑160952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |