Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,850,719:1 +T 16.0% intergenic (+26/‑141) sppA → / → ansA protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,850,7191.T16.0% 221.8 / 47.2 75intergenic (+26/‑141)sppA/ansAprotease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1
Reads supporting (aligned to +/- strand):  ref base . (30/33);  new base T (5/7);  total (35/40)
Fisher's exact test for biased strand distribution p-value = 7.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01

GTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCA  >  NC_000913/1850620‑1850817
                                                                                                    |                                                                                                  
gtgaCAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGAtc                                                                                                     <  1:2021792/100‑1 (MQ=255)
   aCAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGAtcgt                                                                                                  >  2:398370/1‑99 (MQ=255)
     aaGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCgg                                                                                               <  2:1081386/100‑1 (MQ=255)
       gCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGcc                                                                                             <  1:73827/100‑1 (MQ=255)
        cTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGcc                                                                                             <  1:2494515/99‑1 (MQ=255)
         tGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTATTGAGTGGCCGACGATCTGTCGGCcac                                                                                           <  2:1575202/100‑1 (MQ=255)
         tGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACGATCTGTCGGCcac                                                                                           <  1:1000953/100‑1 (MQ=255)
         tGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACGATCTGTCGGCcac                                                                                           <  2:894815/100‑1 (MQ=255)
         tGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACGATCTGTCGGCcac                                                                                           <  1:2001851/100‑1 (MQ=255)
          ggCCGCGTTTAGTGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCgg                                                                                               <  1:774920/95‑1 (MQ=255)
           gCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACGATCTGTCGGCcactc                                                                                         <  2:1080229/100‑3 (MQ=255)
            ccGCGTTTAATGACCCACAAAACCGTTATGCGAATTGCCTGACCTGCGCCCAAATGCGTTAAGACCTGTAATGAGTGGCAGACAGATAGTCGGCcaca                                                                                          >  1:806427/1‑98 (MQ=255)
              ncgTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACattat                                                                                      >  1:1266566/2‑100 (MQ=255)
               cgTTTAATGACCCACAAAACCGTTATGTGTTTTGACTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACGATCTGTCGGCcactcagta                                                                                     <  1:616735/100‑7 (MQ=37)
                  ttAATGACCCACAAAACCGTTATGCTTTTTGCCTGACTTGCGGCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTAttttc                                                                                  <  1:791424/100‑2 (MQ=255)
                  ttAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTAttttt                                                                                  <  2:16651/100‑1 (MQ=255)
                  ttAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTAttttt                                                                                  <  2:1774938/100‑1 (MQ=255)
                   tAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTAtttttt                                                                                 >  1:2020434/1‑100 (MQ=255)
                   tAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACGATCTGTCGGCcactcagtacaag                                                                                 <  1:1719495/100‑11 (MQ=37)
                     aggACCCACAAAAACGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTAc                                                                               >  2:1757270/3‑100 (MQ=255)
                     aTGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTGCTGAGTGGCCGACAGATCGTCGGCCACATTAtttttt                                                                                 >  2:2157619/1‑98 (MQ=255)
                     aTGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTAc                                                                               <  2:1316493/100‑1 (MQ=255)
                      tGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACg                                                                              <  2:1269116/100‑1 (MQ=255)
                       gACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGt                                                                             >  1:1228069/1‑100 (MQ=255)
                         cccACAAAACCGTTATGCGGTTTGCCTGACCTGCGCCAACATGCGGTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTcg                                                                           >  1:400757/1‑100 (MQ=255)
                           cacaAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGCGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTcgac                                                                         <  1:2172654/100‑1 (MQ=255)
                            acaAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTcgacg                                                                        <  2:318452/100‑1 (MQ=255)
                              aaaaCCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGaa                                                                      <  2:2286909/100‑1 (MQ=255)
                                  ccGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGATTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATcc                                                                   <  1:1436005/99‑1 (MQ=255)
                                  ccGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCct                                                                  >  2:2310456/1‑100 (MQ=255)
                                   cGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCctc                                                                 <  2:2060137/100‑1 (MQ=255)
                                       ntGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTcc                                                             >  1:881875/2‑100 (MQ=255)
                                        tGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCAAATTATTTTTTACGTCGACGAATCCTCTTccc                                                            >  2:1717471/1‑100 (MQ=255)
                                            ttttGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTg                                                        <  2:374881/100‑1 (MQ=255)
                                            ttttGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTg                                                        >  1:770620/1‑100 (MQ=255)
                                             tttGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGt                                                       <  2:930350/100‑1 (MQ=255)
                                               tGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGttt                                                     >  1:2278879/1‑100 (MQ=255)
                                                gCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTc                                                    >  2:185566/1‑100 (MQ=255)
                                                 ccTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCg                                                   >  2:120249/1‑100 (MQ=255)
                                                   tGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGcc                                                 <  1:347106/100‑1 (MQ=255)
                                                   tGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGcc                                                 <  2:896412/100‑1 (MQ=255)
                                                    gACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGccc                                                <  2:1383537/100‑1 (MQ=255)
                                                     aCCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGcccc                                               <  1:733559/100‑1 (MQ=255)
                                                      ccTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCa                                              >  1:2229169/1‑100 (MQ=255)
                                                        tGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCata                                            <  1:418009/100‑1 (MQ=255)
                                                         gcgcCAACATGCGTCAAGTCTCGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGCTTCCCCCCctat                                           >  1:898300/1‑100 (MQ=255)
                                                          cgcCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATAtt                                          <  1:254882/100‑1 (MQ=255)
                                                           gcCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATAttt                                         <  1:89175/100‑1 (MQ=255)
                                                            ccAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTc                                        <  2:2027277/100‑1 (MQ=255)
                                                            ccAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTc                                        >  2:2091567/1‑100 (MQ=255)
                                                            ccAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTc                                        >  2:2480933/1‑100 (MQ=255)
                                                             cAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTcc                                       <  1:2076930/100‑1 (MQ=255)
                                                                  tGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATc                                  <  1:2091553/100‑1 (MQ=255)
                                                                   gCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATcc                                 >  2:933798/1‑100 (MQ=255)
                                                                    cGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCg                                >  2:363873/1‑100 (MQ=255)
                                                                    cGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCg                                <  1:120248/100‑1 (MQ=255)
                                                                       tAACTCTTTTACTGCTTGGCCGACAGCTCGTCGGCCACATTATTTTTTACGTTGACTAACCCTCTTCCTTCTGTTTCGCCCCATATTTCCTTATCCg                                <  1:2533273/97‑1 (MQ=255)
                                                                          gTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGt                          >  2:935172/1‑100 (MQ=255)
                                                                          gTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGt                          >  2:2033583/1‑100 (MQ=255)
                                                                          gTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGt                          >  1:1858626/1‑100 (MQ=255)
                                                                           tCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCTGCAt                             >  1:807516/1‑96 (MQ=255)
                                                                           tCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTa                         <  2:2104232/100‑1 (MQ=255)
                                                                              aaaataatgTGGCCGACGATCTGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCa                      >  2:811259/9‑100 (MQ=37)
                                                                               aaataatgTGGCCGACGATCTGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAg                     >  2:2377046/8‑100 (MQ=38)
                                                                                tACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAgg                    <  1:268394/100‑1 (MQ=255)
                                                                                 aCTGAGTGGCCGACAGATCGTCGGCCACATTATTTTCTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGt                   <  1:2045429/100‑1 (MQ=255)
                                                                                   aatgTGGCCGACGATCTGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTgc                 >  2:2275985/4‑100 (MQ=39)
                                                                                    gAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTgcg                <  2:2323237/100‑1 (MQ=255)
                                                                                      gTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCt              >  1:932965/1‑100 (MQ=255)
                                                                                      gTGGCCGACGATCTGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTgcgc               >  1:959483/1‑99 (MQ=255)
                                                                                       tGGCCGACGATCTGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTc             >  2:2283270/1‑100 (MQ=255)
                                                                                        ggCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTcc            >  2:2338341/1‑100 (MQ=255)
                                                                                         gCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATAGTTCCTTATCCGCATAGTATCAGGTGCGCTccc           >  2:762886/1‑100 (MQ=255)
                                                                                              cAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGc      >  1:2180401/1‑100 (MQ=255)
                                                                                              cAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGc      >  2:210153/1‑100 (MQ=255)
                                                                                               aGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGcc     <  2:1390462/100‑1 (MQ=255)
                                                                                                 aTCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTc   >  2:2091458/1‑100 (MQ=255)
                                                                                                  tcgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCa  >  2:1041894/1‑100 (MQ=255)
                                                                                                  tcgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCa  <  2:769209/100‑1 (MQ=255)
                                                                                                  tcgtcgGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCa  >  2:120741/1‑100 (MQ=255)
                                                                                                    |                                                                                                  
GTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCA  >  NC_000913/1850620‑1850817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: