| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,866,592:1 | +C | 100% | coding (960/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,866,588 | 1 | . | C | 95.1% | 344.5 / 9.6 | 102 | coding (964/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base C (52/45); total (55/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 112 total aligned reads displayed.
ATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑C‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACA > NC_000913/2866490‑2866682 | aTCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c < 2:1252517/100‑1 (MQ=255) tCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c > 1:2098460/1‑100 (MQ=255) cGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c > 1:2294934/1‑100 (MQ=255) ggACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c‑c > 1:458857/1‑100 (MQ=255) gACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c < 1:1112230/98‑1 (MQ=255) ccTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGATACTGGCCTTTCGGACAGATGCTTACTTACTAGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c‑cct > 1:1013085/1‑97 (MQ=255) ccTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c‑cctg > 2:481273/1‑97 (MQ=255) ttttATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c‑cctgcg > 2:505996/1‑95 (MQ=255) ttttATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑c‑c‑c‑cctgcg > 1:809839/1‑95 (MQ=255) ttATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGtt < 2:1214615/100‑1 (MQ=255) ttGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCCG‑C‑C‑C‑CTGCGTTTGCa > 2:73882/1‑100 (MQ=255) ttGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGc < 2:1901708/100‑1 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAg < 1:1721406/100‑1 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAg < 2:795333/100‑1 (MQ=255) gtgCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAg < 2:1384712/100‑1 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGa < 1:613252/100‑1 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGa > 1:594009/1‑100 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGa > 1:557393/1‑100 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGa > 2:613255/1‑100 (MQ=255) gCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGa < 1:2138491/100‑1 (MQ=255) acaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGAtt > 2:1131188/1‑100 (MQ=255) acaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGAtt > 2:2372022/1‑100 (MQ=255) acaGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGAt > 1:1081820/1‑99 (MQ=255) caGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGAttt > 2:1079167/1‑100 (MQ=255) caGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGAttt > 1:7516/1‑100 (MQ=255) aaaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTcgc < 1:1131184/100‑1 (MQ=255) aaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTcgcg < 1:2099958/100‑1 (MQ=255) aaaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTcgcg < 1:530293/100‑1 (MQ=255) aaGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCgcgc < 2:784569/100‑1 (MQ=255) aGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCa > 2:330310/1‑100 (MQ=255) ggCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCaa > 2:941741/1‑100 (MQ=255) ggCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCaa > 2:1918069/1‑100 (MQ=255) ccAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAAc > 1:2477775/1‑100 (MQ=255) ccAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAAc > 1:2371569/1‑100 (MQ=255) ccAGCCGCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAAc < 2:1361866/100‑1 (MQ=255) cAGCCTCGCTTGAGACTGGCCTTCCTGACAGATGCTTACTTACTCGCGGATCAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCgcgc < 1:1014009/95‑1 (MQ=255) gCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGgc > 2:859250/1‑100 (MQ=255) gCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGgc < 1:1900174/100‑1 (MQ=255) ccTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑C‑C‑CTCTGCGTTTGCAGGATTTCGCGCAAACAgc > 1:160813/1‑99 (MQ=255) cGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAg < 2:1492140/100‑1 (MQ=255) gCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAgg < 1:1158985/100‑1 (MQ=255) tGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCt < 2:279413/100‑1 (MQ=255) agaCTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACCGCGCAGGCCTTc > 1:1886965/1‑100 (MQ=255) gaCTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCa > 1:166530/1‑100 (MQ=255) gaCTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCa > 1:1670995/1‑100 (MQ=255) ggCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCt > 2:1766501/1‑100 (MQ=255) ggCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTACACCt > 2:2448824/1‑100 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa > 2:1020794/1‑100 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa < 1:764548/100‑1 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa > 1:571760/1‑100 (MQ=255) cTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGaa > 1:28907/1‑100 (MQ=255) tttCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAAt > 2:943846/1‑100 (MQ=255) tCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCt > 1:818191/1‑100 (MQ=255) tCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCt < 1:2009453/100‑1 (MQ=255) cTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTg > 2:849254/1‑100 (MQ=255) gACAGTTGCTTACTTTCTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc < 2:2097242/100‑1 (MQ=255) gACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGc > 1:376240/1‑100 (MQ=255) gATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAac > 2:951180/1‑100 (MQ=255) aTGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAaca > 2:1676911/1‑100 (MQ=255) aTGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAac < 1:1791669/99‑1 (MQ=255) tGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAacac > 1:2249936/1‑100 (MQ=255) cttacttaCTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGt > 2:1805943/1‑100 (MQ=255) ttacttacTCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGtt > 2:405538/1‑100 (MQ=255) tacttactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTc > 2:1535943/1‑100 (MQ=255) tacttactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTc > 1:216382/1‑100 (MQ=255) acttactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCa < 2:2062372/100‑1 (MQ=255) ttctCGCGGAACAGCGCTTCGATATTCAG‑C‑CGC‑CTGCGTTTGAAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg > 2:1750978/3‑100 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg < 2:171553/100‑1 (MQ=255) tactCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACgg > 2:2285277/1‑100 (MQ=255) actCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACggg < 1:446554/100‑1 (MQ=255) ctCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCCACCTGAATCTGGCGAACACGTTCACGGGt > 1:205783/1‑100 (MQ=255) tCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACggg < 1:2248058/98‑1 (MQ=255) tCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTg < 1:1051494/100‑1 (MQ=255) tCGCGGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTg < 2:2294948/100‑1 (MQ=255) cgcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 1:1969441/1‑100 (MQ=255) cgcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa < 2:2292495/100‑1 (MQ=255) cgcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 1:1470080/1‑100 (MQ=255) cgcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 2:1259917/1‑100 (MQ=255) cgcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 1:2467794/1‑100 (MQ=255) cgcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGa > 1:396278/1‑100 (MQ=255) gcgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAg < 1:995812/100‑1 (MQ=255) gcgGAACAGCGCTTCGATATTCAG‑CGC‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCTCAGGCCTTCAACCTGAATCTGGCGAACAAGTTCACGGGTGAg < 2:1752508/100‑1 (MQ=255) cgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAgg < 2:1597660/100‑1 (MQ=255) cgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAgg < 2:1407058/100‑1 (MQ=255) cgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAgg > 1:818543/1‑100 (MQ=255) cgGAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAgg < 2:804248/100‑1 (MQ=255) ggAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGc < 2:1866682/100‑1 (MQ=255) gAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGTGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGcc < 1:77774/100‑1 (MQ=255) gAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGcc < 1:1368787/100‑1 (MQ=255) gAACAGCGCTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGcc > 1:2129981/1‑100 (MQ=255) gcgcTTCGATATTCAGCC‑C‑C‑CTGCGTTGCCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAtt < 1:499624/99‑1 (MQ=255) gcgcTGCGATATTCAG‑CAC‑C‑CTGCGTTTGCAGGATGTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt < 1:1761709/100‑1 (MQ=255) gcTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCa < 1:849927/100‑1 (MQ=255) cTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCNAGCCNTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCan < 2:1236373/100‑2 (MQ=255) cTTCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCAc > 2:2555240/1‑100 (MQ=255) ttCGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACg < 2:964191/100‑1 (MQ=255) cGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAc < 1:859247/100‑1 (MQ=255) cGATATTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGAc < 2:1545502/100‑1 (MQ=255) atatTCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCACACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACg > 2:1250132/1‑96 (MQ=255) ttCAGCC‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACa > 2:2466791/1‑100 (MQ=255) | ATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAG‑C‑C‑C‑CTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTTCACGACCTACA > NC_000913/2866490‑2866682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |