| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,517,951:1 | (C)6→7 | 100% | coding (285/522 nt) | fecI ← | RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,517,945 | 1 | . | C | 74.0% | 240.5 / 91.3 | 96 | coding (291/522 nt) | fecI | RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
| Reads supporting (aligned to +/- strand): ref base . (16/9); new base C (34/37); total (50/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 106 total aligned reads displayed.
CAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGC > NC_000913/4517846‑4518039 | cAGAAACGCTTCACGTGTTTGGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑Ct > 1:1579272/1‑100 (MQ=255) aGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑c < 2:1403168/100‑1 (MQ=255) aGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑c < 2:1186830/100‑1 (MQ=255) gAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cc > 1:534616/1‑100 (MQ=255) aaaCGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑ccc < 1:1326098/100‑1 (MQ=255) cGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cccc‑c‑c > 1:1225623/1‑100 (MQ=255) ttCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cccc‑c‑cctc < 2:716079/100‑4 (MQ=255) ttCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTcc > 2:1848957/1‑100 (MQ=255) tCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑cccc‑c‑cctcc < 1:2427393/100‑5 (MQ=255) aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCgg > 2:2592147/1‑100 (MQ=255) aCGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGc > 2:1379328/1‑100 (MQ=255) aCGTGTTTTGCCGGTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCAGGTTGCCTTGCGCGTTCCTCCGGTGAAGG‑CG‑CC‑cccg‑c‑ccgccg > 2:2321471/1‑94 (MQ=255) cGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCa < 2:203905/100‑1 (MQ=255) cGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCa > 2:16223/1‑100 (MQ=255) gtgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCa < 2:1869696/100‑1 (MQ=255) gtgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGCGTCTCCAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CGCCC‑CCCC‑C‑CTCCgg < 1:226174/98‑1 (MQ=255) tgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCAt < 1:773382/100‑1 (MQ=255) tgtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCAt > 2:2564866/1‑100 (MQ=255) gtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATa < 2:709363/100‑1 (MQ=255) gtTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATaa > 1:696102/1‑100 (MQ=255) tttGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAg > 2:860778/1‑100 (MQ=255) tttGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAg < 2:1519754/100‑1 (MQ=255) tGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAgcg < 2:1102563/100‑1 (MQ=255) gCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAgcgc > 1:729479/1‑100 (MQ=255) cGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCa < 2:2144567/100‑1 (MQ=255) cGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAg < 2:1010436/100‑1 (MQ=255) gTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAg > 1:2169648/1‑100 (MQ=255) tttAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCa < 1:1877679/100‑1 (MQ=255) tAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCAt > 2:446042/1‑100 (MQ=255) aGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCAtct > 1:2213634/1‑100 (MQ=255) gCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCCTAAGCGCCAGCAtct > 2:1145810/1‑100 (MQ=255) gCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCAtct > 2:2184056/1‑100 (MQ=255) cccGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTcc < 2:177662/100‑1 (MQ=255) ccGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTcc < 2:563059/100‑1 (MQ=255) cGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCa < 2:1565930/100‑1 (MQ=255) cGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCa < 2:1782775/100‑1 (MQ=255) gTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGa < 2:1225627/100‑1 (MQ=255) tCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGAt > 2:1375827/1‑100 (MQ=255) ccAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGAt < 2:2584261/100‑1 (MQ=255) cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATa < 1:342982/100‑1 (MQ=255) cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATa > 1:1828109/1‑100 (MQ=255) cAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATa > 1:1760203/1‑100 (MQ=255) tGCTGTCGAGGAGTTGTCGGGTCTCGAGTTGGCTTTCGCGTTACTCAGGTGAGGG‑CG‑CTCCCCC‑C‑CTTCGGCCTAAGCGCCAGCCTCCCCAgtt > 1:1987809/1‑92 (MQ=255) tGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCttttt < 2:1858063/100‑1 (MQ=255) gTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTc > 1:265112/1‑100 (MQ=255) tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCTCCAGCATCTCCAGATACGCTTTTTcc < 2:1579281/100‑1 (MQ=255) tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 1:742478/100‑1 (MQ=255) tCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 1:2002317/100‑1 (MQ=255) cGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCa > 1:1032420/1‑100 (MQ=255) cGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCa > 1:1987179/1‑99 (MQ=255) cGAGGAGTTGGAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTcc < 1:2093621/99‑1 (MQ=255) gaggagTTGTAGGGTCTCGAGTTGGCTTTCGCGTTGCTCAGGTGAAGG‑CG‑CT‑CCCCAC‑CTCCGGCATACGCGCCCGCATCTCCCGATACGCTTTTTcc > 1:1725498/1‑98 (MQ=255) gaggagTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAgc > 2:45283/1‑100 (MQ=255) tgttaggTCTCGGGGTGGCTTTCGCCGTCCCCAAGTGAAGGCCC‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGtt < 2:1429300/95‑1 (MQ=255) gTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg > 1:468963/1‑100 (MQ=255) tcgggTCTTGAGTGGTTTGTCGCTTTCCTCTGGTAAAGG‑CG‑CT‑CCCC‑CGCTCCGGCATAAGCGTCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg < 1:847239/98‑1 (MQ=255) tAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCg < 2:573573/100‑1 (MQ=255) aGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCgg < 2:2295169/100‑1 (MQ=255) aGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCgg < 1:1525835/100‑1 (MQ=255) aGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAgcgagatcggaa > 1:902733/1‑91 (MQ=255) ggTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCTGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCg < 1:1381525/100‑1 (MQ=255) tctcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaa > 2:1778430/1‑100 (MQ=255) ctcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaaa > 1:127407/1‑100 (MQ=255) cgcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGaa < 2:44426/97‑1 (MQ=255) tcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAAc > 1:2181414/1‑100 (MQ=255) tcGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAAc < 1:939553/100‑1 (MQ=255) cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa > 2:2310328/1‑100 (MQ=255) cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa < 2:1672489/100‑1 (MQ=255) cGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACa > 1:2167169/1‑100 (MQ=255) aGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAgg < 2:2062010/100‑1 (MQ=255) aGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAgg < 1:516828/100‑1 (MQ=255) gTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt > 2:897220/1‑100 (MQ=255) gTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt < 1:1207963/100‑1 (MQ=255) ttGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTc < 2:448490/100‑1 (MQ=255) ggCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccac > 1:2590072/1‑100 (MQ=255) gCTTTCGCGTTCCTCAGGTGAAGT‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGt < 1:1270408/96‑1 (MQ=255) cTTTCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCTGCTCGTTTCCGCGCAACAGGTccacc > 1:43997/1‑100 (MQ=255) tttCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacca < 2:1139001/100‑1 (MQ=255) tttCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTccacca < 1:2111424/100‑1 (MQ=255) tCGCGTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATc > 2:360568/1‑100 (MQ=255) cgcgTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCa > 2:1582614/1‑100 (MQ=255) gcgTTCCTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCAc > 1:1770019/1‑100 (MQ=255) ccTCAGGTGACGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGGTTCGGCGAAACAGGTCCACCATCCcgcgat > 1:1574897/1‑98 (MQ=255) ccTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGtt > 2:1890439/1‑100 (MQ=255) cTCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGttt > 2:1695877/1‑100 (MQ=255) cTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg > 1:445365/1‑100 (MQ=255) cTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg > 1:1850159/1‑100 (MQ=255) tCAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTg < 1:1453216/100‑1 (MQ=255) cAGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACACTTTTTCCAGCGAGTTTGGGCGAACAAGGTCCACCATCACGCGttt > 1:1776580/1‑98 (MQ=255) aGGTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGc > 2:2103722/1‑100 (MQ=255) ggTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCg > 2:1794362/1‑100 (MQ=255) ggTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCg > 2:1039138/1‑100 (MQ=255) gTGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGa < 1:202827/100‑1 (MQ=255) tGAAGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGAt < 1:1454492/100‑1 (MQ=255) tGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATa > 1:720549/1‑100 (MQ=255) aaGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAg < 2:857773/100‑1 (MQ=255) aGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGt > 2:105025/1‑100 (MQ=255) aGG‑CG‑CTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGt > 2:108532/1‑100 (MQ=255) gg‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGc > 2:2578728/1‑100 (MQ=255) g‑cg‑cTCCCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGc < 2:2005364/100‑1 (MQ=255) | CAGAAACGCTTCACGTGTTTTGCCGTTTAGCCCGTCCAGCATGCTGTCGAGGAGTTGTAGGGTCTCGAGTTGGCTTTCGCGTTCCTCAGGTGAAGG‑CG‑CT‑CCCC‑C‑CTCCGGCATAAGCGCCAGCATCTCCAGATACGCTTTTTCCAGCGCGTTTCGGCGAAACAGGTCCACCATCACGCGTTTGGCGATAGTGC > NC_000913/4517846‑4518039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |