| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 561,696:1 | (G)6→7 | 100% | coding (2000/2604 nt) | sfmD → | putative outer membrane export usher protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 561,690 | 1 | . | G | 92.9% | 273.4 / 13.7 | 85 | coding (1994/2604 nt) | sfmD | putative outer membrane export usher protein |
| Reads supporting (aligned to +/- strand): ref base . (2/4); new base G (34/44); total (37/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCCACAACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGC > NC_000913/561593‑561784 | ggCCACAACCTGAGTTATCGCGTAAGCCAGGGTGATACCTCGAATAATGGGTACAGGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCt > 2:258337/1‑98 (MQ=255) gCCACAACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggg > 1:855510/1‑100 (MQ=255) gCCACAACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggg > 2:2309153/1‑100 (MQ=255) ccACAACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑gggg > 2:2238136/1‑100 (MQ=255) ccACAACCTGAGTGATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑gggg < 2:1603070/100‑1 (MQ=255) cacaACCTGAGTTATCACGTAAGCCAGGGTGGTACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg < 2:1988008/100‑1 (MQ=255) cacaACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg < 2:2077845/100‑1 (MQ=255) cacaACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg > 1:1789098/1‑100 (MQ=255) cacaACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg < 2:2035224/100‑1 (MQ=255) caACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATGATCGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg‑gg < 1:1122237/100‑2 (MQ=255) aCCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATTGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg‑ggcg > 2:1203910/1‑97 (MQ=255) aCCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg‑ggcg > 1:319032/1‑97 (MQ=255) ccTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg‑ggcgg < 2:2092664/100‑5 (MQ=255) cTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑ggggg‑ggcggg < 1:730758/100‑6 (MQ=255) cTGAGTTATCACGTAAGCCAGGGGGATACGTCGAATAATGGGTACACGGGCAGCGCAACGGCAAGCTGGCAGGCCGCTTACGGTACGCT‑ggggg‑ggcgg > 1:1591131/1‑95 (MQ=255) tGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCCGGGGGG‑GCGGGt < 2:1701920/100‑1 (MQ=255) gAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGta < 2:1360706/100‑1 (MQ=255) gAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGta < 2:1511729/100‑1 (MQ=255) aGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGtat < 2:798752/100‑1 (MQ=255) gTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGtata > 2:1569256/1‑100 (MQ=255) ttATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCCAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGGATaa > 1:1713475/1‑100 (MQ=255) ttATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATaa < 1:2428079/100‑1 (MQ=255) ttATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATaa < 1:179562/100‑1 (MQ=255) tATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAAc < 1:1834473/100‑1 (MQ=255) tCACGTAAGCCAGGGTGATACCTCGAATAATGGGTAGACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTa < 2:1816475/100‑1 (MQ=255) tCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTa > 2:923345/1‑100 (MQ=255) cACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTAc > 2:1077687/1‑100 (MQ=255) aCGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACg > 1:1776017/1‑100 (MQ=255) aCGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACg > 2:1691369/1‑100 (MQ=255) gTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGAc < 1:114399/100‑1 (MQ=255) tAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGAcc > 1:1866219/1‑100 (MQ=255) tAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGAcc > 1:1393347/1‑100 (MQ=255) aGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGCCcg > 1:2394801/1‑99 (MQ=255) gCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACcgcg < 1:1694113/100‑1 (MQ=255) gCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACcgcg < 2:1789107/100‑1 (MQ=255) cAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGAt < 2:2397130/100‑1 (MQ=255) aGGGTGATACCTCTAATAATGGGTACAGGGGGAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATc < 1:480632/100‑1 (MQ=255) gggTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCa < 2:915576/100‑1 (MQ=255) gggTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCa < 1:1685705/100‑1 (MQ=255) ggTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCaa < 1:1851657/100‑1 (MQ=255) tGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACa < 2:2386732/100‑1 (MQ=255) tGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACa < 1:1884715/100‑1 (MQ=255) gATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACAt < 2:1179330/100‑1 (MQ=255) tACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATCAACATGAc < 1:1114720/100‑1 (MQ=255) aCCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGAc < 2:683348/100‑1 (MQ=255) aCCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGAc < 1:2112644/100‑1 (MQ=255) aCCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACGGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGAc < 1:1061471/100‑1 (MQ=255) aCCTCGAATAATGGGTACAAGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGAc > 2:2377838/1‑100 (MQ=255) ccTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGa > 2:1772940/1‑98 (MQ=255) ccTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACg > 1:1895888/1‑100 (MQ=255) ccTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACg > 2:788942/1‑100 (MQ=255) ccTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACg < 2:1568746/100‑1 (MQ=255) cTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGt > 2:1035353/1‑100 (MQ=255) cTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGt > 2:2577827/1‑100 (MQ=255) cTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGt > 2:2057525/1‑100 (MQ=255) cTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGt > 1:1795296/1‑100 (MQ=255) cTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGt > 1:2272455/1‑100 (MQ=255) tCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGtt > 2:2277392/1‑100 (MQ=255) gAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTaa > 1:1813572/1‑100 (MQ=255) aataatGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACt < 2:2059857/100‑1 (MQ=255) ataatGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACt > 1:1152440/1‑100 (MQ=255) ataatGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTg > 1:138556/1‑100 (MQ=255) taatGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTg < 1:378538/100‑1 (MQ=255) atGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGc < 2:54717/100‑1 (MQ=255) tGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCa < 2:572659/100‑1 (MQ=255) gTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCt < 1:2140586/100‑1 (MQ=255) gTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCt < 1:2139492/100‑1 (MQ=255) tACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTg > 1:538771/1‑100 (MQ=255) cacGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTc < 2:880980/100‑1 (MQ=255) acGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGGACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCt < 2:1020328/100‑1 (MQ=255) ggCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCTAGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGc > 1:1414836/1‑100 (MQ=255) gcgcCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGgtg < 1:1099806/100‑1 (MQ=255) gcCACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGtgtg > 2:1166762/1‑100 (MQ=255) ccACGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTgg > 2:2252146/1‑100 (MQ=255) aCGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACGGCGATCAACATGAGGTTAACTGGCTGctggctggggttgggg > 2:1677122/1‑90 (MQ=255) aCGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGGTGTCTGACGGTGTGGTc > 2:1121082/1‑100 (MQ=255) aCGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTgg > 1:1573046/1‑98 (MQ=255) aCGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTc < 2:1248734/100‑1 (MQ=255) cGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCg > 2:1638570/1‑100 (MQ=255) cGGCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCg > 2:1259264/1‑100 (MQ=255) gCAAACTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCggg < 2:215969/100‑1 (MQ=255) aaaCTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCa < 1:2094349/100‑1 (MQ=255) aCTGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATg > 2:1081590/1‑100 (MQ=255) tGGCAGGCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGaa < 2:1859690/100‑1 (MQ=255) ggCAGGCCGCTTACGGTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATCAACATAACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGaaaa > 1:1654992/1‑100 (MQ=255) ggCCGCTAACTGTACGCT‑GGGGGAGCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATg < 1:1361554/99‑1 (MQ=255) ggcGCTAACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATgg < 1:658122/97‑1 (MQ=255) gCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGCCCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATg > 1:1355486/1‑98 (MQ=255) gCCGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGc < 2:2288334/100‑1 (MQ=255) ccGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCa < 2:2032538/100‑1 (MQ=255) cGCTTACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCAt < 2:561770/100‑1 (MQ=255) ttACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAAc < 1:1166758/100‑1 (MQ=255) ttACGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAAc < 1:2309139/100‑1 (MQ=255) tctcGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAAc < 1:1878375/97‑1 (MQ=255) cGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAAcaga > 2:1878385/1‑97 (MQ=255) cGGTACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCt > 2:1296263/1‑100 (MQ=255) gTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATGAAGATGACGTTAACTGGTAGCTGTCTGGAGGTGTGGTCGGGCATGAAAATGGCATAACGCTGag < 1:650317/100‑1 (MQ=255) tACGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGag > 1:2534259/1‑100 (MQ=255) aCGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagc < 2:855513/100‑1 (MQ=255) aCGCTGGGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGagc < 2:2107137/100‑1 (MQ=255) | GGCCACAACCTGAGTTATCACGTAAGCCAGGGTGATACCTCGAATAATGGGTACACGGGCAGCGCCACGGCAAACTGGCAGGCCGCTTACGGTACGCT‑GGGGG‑GCGGGTATAACTACGACCGCGATCAACATGACGTTAACTGGCAGCTGTCTGGCGGTGTGGTCGGGCATGAAAATGGCATAACGCTGAGC > NC_000913/561593‑561784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |