| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 409056 = | NA (NA) | 12 (0.140) | 6/164 | NT | NA | noncoding (5/37 nt) | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 409089 = | NA (NA) | intergenic (+139/+19) | ykiA/rdgC | pseudogene/nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function | |||||
AGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/409159‑409056‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAA > NC_000913/409089‑409185 AGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATC < 2:2263202/100‑1 GCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCC > 2:908489/1‑100 GCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTACTTTAATGCCGGATGCGACGCCTGCCGCGTATTATCC > 2:478782/1‑100 TAATGCAAACCCTGATTGAAGTATTAGGTGGCAAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGTTGCGACGCCTGCCGCGTCGTATCC < 1:80971/96‑1 AATTCAAAACCTTATTGAAGGATTAGGTGTCGAAGCACAACGTTATTTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGtcgt < 1:967070/100‑5 CAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCAC < 2:656376/100‑1 CTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTT > 2:2049384/1‑100 AATGCCGGATGCGCCGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAA > 2:368454/1‑99 AATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAT > 1:1877414/1‑100 AATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAAT > 2:249422/1‑100 ATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCCACTAACGTTGTGCTTCGCCACCTAATCCTTCAACCAGGTTTTGAATT > 1:17786/1‑100 ATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATT > 2:1544714/1‑100 ATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATT > 1:154395/1‑100 GCCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAA > 1:100569/1‑100 CCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAAC > 1:2538535/1‑100 CCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAAC > 1:2417914/1‑100 CCGGATGCGACGCCTGCCGCGTCTTATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAAC > 1:2340915/1‑100 ATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA < 1:952964/100‑1 ATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA > 2:2270549/1‑100 ATCCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGA > 2:241192/1‑100 CCGGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATG > 2:595003/1‑100 GGCATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAA < 1:1378948/100‑1 AGCGTTAATTCAAAACCTGATTGAAGGATTAGGTGGCGAAGCACAACGTTAATTGCTGATTTTCCTTTAATGCCGGATGCGACGCCTGCCGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/409159‑409056‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATTAAAGGAAAATCAGCAATTAACGTTGTGCTTCGCCACCTAATCCTTCAATCAGGTTTTGAATTAACGCTGCCAGTTCACCAGTCATCAGGATGAA > NC_000913/409089‑409185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |